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11-2046-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8629523 [Map]; Strand: w
      • AT2G19980.1 - [+] show detail - CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 ...
        Distance: -1303; Region: intergenic
      • AT2G19990.1 - [+] show detail - pathogenesis-related protein-1-like
        Distance: 461; Region: intergenic
    Flanking Genome Sequence: 11-2046-1 - 5-prime edge
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TAAAATGAGC NNGAGTACCC GGTTNAGAAG NCCAATNTAG
    CTCTNTAGGA GGGTCCTTTA AATCTCCCAA CACTGAGATT CAACTTTTGA
    AACTGTCTTT ATATGGAAAT TCTTTTCTTT CCTTTTCTAT ATATTATTAA
    TAAAAAATCA ACCTTTAAAG TTCGGCAAAA AAAAAAAANC TTAAAANNTN
    NNNNGTTTGG TNTTTGNAAT AAANGGGCTN TNNCCNGGNT TAAAAAANTT
    TNCNNNTTTT TGNAAAAGGT NNNNTTTGGT NNANGGGNTT TNNGGTTTTN
    NAANNTAAAA AGGCCCNNGT TTTTTTTGGN NGNAANNCAA ANGNAAAAAA
    AAANCTNGNA AAANTTNCNA CCCGGGNCNG GGANCCNCCC GGGCCCTTNN
    AA

AT2G19980.1

Model type
Protein coding
Short Description
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
Computational Description
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: sepal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related (InterPro:IPR001283), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (TAIR:AT2G19970.1); Has 1947 Blast hits to 1907 proteins in 260 species: Archae - 0; Bacteria - 42; Metazoa - 857; Fungi - 192; Plants - 831; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G19990.1

Model type
Protein coding
Short Description
pathogenesis-related protein-1-like
Curator Summary
Encodes a PR-1-like protein homolog that is differentially expressed in resistant compared to susceptible cultivars by powdery mildew infection. The deduced amino acid sequence has 24 amino acids comprising the signal peptide and 140 amino acids of the mature peptide (15 kDa). Northern blot analysis showed accumulation of the corresponding mRNA 12 h after inoculation of resistant barley cultivars with Erysiphe graminis. Though the Genbank record for the cDNA associated to this gene model is called 'PR-1', the sequence actually corresponds to PR-1-like. Expression of this gene is not salicylic-acid responsive.
Computational Description
pathogenesis-related protein-1-like (PR-1-LIKE); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related, conserved site (InterPro:IPR018244), Allergen V5/Tpx-1 related (InterPro:IPR001283), Ves allergen (InterPro:IPR002413), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (TAIR:AT4G33720.1); Has 3036 Blast hits to 2941 proteins in 366 species: Archae - 0; Bacteria - 64; Metazoa - 1638; Fungi - 337; Plants - 905; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).
Link
InterPro Scan - TAIR