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11-2067-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18964250 [Map]; Strand: w
      • AT3G51060.1 - [+] show detail - Lateral root primordium (LRP) protein-related
        Distance: -94; Region: promoter
    Flanking Genome Sequence: 11-2067-1 - 5-prime edge
    CAAATGAAGA AGAGATGAGA GGAGACAGAG AATTAAATTA GAGGAGCAGA 
    AGAGAGAGAG AGAGAGAGAG AGANATTAAT AGGGTCNTGG GGGCCGTNGC
    AGAGCGCNAG ANAGATGATT TANATCTCTC TTCTTCTTCT TCCTTCTTAC
    ATATCTGTGT GTGTTTCTTA AATACTCTCT CTCTCNCACC GACANACANG
    TTNTGCTTTT TNATCAGAGT CTCAAANNGC TATTCCNACT TNNANACACT
    ACACNCCCAG AGANTGAATC NCCN
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18964175 [Map]; Strand: w
      • AT3G51060.1 - [+] show detail - Lateral root primordium (LRP) protein-related
        Distance: -169; Region: promoter
    Flanking Genome Sequence: 11-2067-1 - 3-prime edge
    ATTGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTNTCATCA 
    TTGTTTCTTT GTCTTGTTTT TCCAGATTTT GCAAAAATAT AATTTTGTTT
    CTCTCATGTT TTGTTGTTAC AAAATGAAAA CAATTCATCT CTTATCGTTG
    ATATATAATC GGGCGGTTAT TATGCTGCCA CGTTAGCATA AAATGGATTT
    TTCTCTCTTG GTCCTTTTTA TTCCGGGAAA CCCGCTTTTT TTCTTTCTTC
    TTTTTTTCTT ACATATATGA AATTTTTATA TGTATAAATG GTGGAATGTG
    AATAACTAAT TTTCCTTAAA AAGGAGTAAA AATAATATCA TTACGGNATC
    ANAATACTAT TTTTGATTAT CCTAAGATAG TTCTATATAT ATTTCGGGAC
    CTATTAATTA GACCTCCTAA TCATGATCTA GNACTGACTA CAAAACCTTG
    CCAAAAGTCC ATAGGGNCCA TNCATTTNTN ATTCCATTNN TGNGTNTATA
    TGAGTGACTA TGAGACTAAT NGNGACAAAT GCTGCANATA TATTATNGTC
    TACATANTCA CGAGCATCAG CNNNCTAANT GTGCCCNGAT AAAATGTAAG
    GGACNNTCCN GGTNCNNNAA ANNNNCTCAT NNTCATACAA AANCNGTGGT
    GGGANANAAN TNATATNAAC NAACTTANCN NGNNATANCN NNGNNGGANN
    NNANAAANAA ATANNGCNTA GAAAANNNCN CTNANNCNCN NNNGCNCTCG
    NTNNGNACAA ATATTTTNGN NTGGNGCAGN ANNCTNCCNN CNNCAANNTA

AT3G51060.1

Model type
Protein coding
Short Description
Lateral root primordium (LRP) protein-related
Curator Summary
A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. STY1/STY2 double mutants showed defective style, stigma as well as serrated leaves. Binds to the promoter of YUC4 and YUC8 (binding site ACTCTAC)
Computational Description
STYLISH 1 (STY1); FUNCTIONS IN: protein heterodimerization activity, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: Lateral root primordium (LRP) protein-related (TAIR:AT5G66350.1); Has 244 Blast hits to 244 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 38; Fungi - 9; Plants - 179; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).
Link
InterPro Scan - TAIR