Home
Mutant Lines
11-2105-1

11-2105-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 4; Position: 450112 [Map]; Strand: w
- AT4G01030.1 - [+] show detail - pentatricopeptide (PPR) repeat-containing protein
  Distance: 0; Region: exon1 (CDS)

ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
TGCCTGGACG AGATGGAGAT ATGTGGTCTG AAGCCAGATA TAGTGACATG 
GAACTCTCTT TTGTCAGGTT ATGCTTCTAA AGGCTTATCC AAAGATGCCA 
TTGCTGTATT GAAGAGAATG CAAATTGCTG GTCTGAAGCC AAGCACNGAG 
CTCAATTAGT AGTCTTCTTC AAGCTGTAGC TGAACCGGGG CATCTTAAAC 
TTGGGAAAGC GATCCACGGA TACATATTAA GAAATCAGCT TTGGTACGAT 
GTGTATGTAG AAACCACCTT GATCGACATG TATATTAAAA CTGGCTACTT 
GCCTTACGCC CGGATGGTTT TTGATATGAT GGATGCGAAG AACATTGTTG 
CTTGGAATT

5 prime edge [+] show sequence
1. Chromosome: 4; Position: 450176 [Map]; Strand: w
  - AT4G01030.1 - [+] show detail - pentatricopeptide (PPR) repeat-containing protein
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 11-2105-1 - 5-prime edge
```
CGTCCAGGAG ACCGATAGCA TCATCTACAT AACCAAGTTT CGTATAACTC 
GATAAAATCG AGTTCCACGA AGACAAATTC CGGTCTTTCA TCGAGTTAAA 
AACTTTCCTG GATAATTCAA GCT
```

AT4G01030.1

Model type: Protein coding
Short Description: pentatricopeptide (PPR) repeat-containing protein
Computational Description: pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G20230.1); Has 44944 Blast hits to 14972 proteins in 296 species: Archae - 1; Bacteria - 32; Metazoa - 191; Fungi - 174; Plants - 43677; Viruses - 0; Other Eukaryotes - 869 (source: NCBI BLink).
Link: InterPro Scan - TAIR