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11-2148-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2132558 [Map]; Strand: c
      • AT5G06865.1 - [+] show detail - other RNA
        Distance: 0; Region: exon2 (NonCoding)
      • AT5G06865.2 - [+] show detail - other RNA
        Distance: 0; Region: exon2 (NonCoding)
      • AT5G06860.1 - [+] show detail - polygalacturonase inhibiting protein 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-2148-1 - 3-prime edge 
    ATTGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
    CNATGCGGAG ACGCCACCGT TAACCACCGT GTTACCGCCT TAACCATATT 
    CTCCGGCCAG ATCTCCGGTC AGATCCCGGC TGAAGTCGGT GACTTGCCGT 
    ATCTTGAGAC CCTTGTCTTC CGCAAACATC TCTAACCTCA CCGGTACAAT 
    CCAACCCACC ATCGCCAAAC TCAAGAACCT CCGAATGCTC AGGCTCAGCT 
    GGACGAATNT GACAGGTCCA ATTCCTGACT TTATAAGTCA GCTCAAGAAT 
    CTCGAGTTCT TAGAACTTTC CTTCAATGAT CTCTCTGGTT CCATTCCAAG 
    TTCTCTCTCT ACGTTACCTA AAATCTTGGC TCTTGAACTT AGCAGGAACA 
    AACTTACAGG TAAAGAACGA TCTTTTCCTT TATTACATNA TTCAGTGTCT 
    TGTCTAAACA ACGATCTTTA TGTTGTAGGT TCCATACCAG AGTCATTCTG 
    GGTCGTTTCC AGGAACAGTC CCTGACCTTC GCCTATCACA TAACCNGCTC 
    TTCGGTCCAA TACCCANATC ATTAGGCAAC ATCTACTTTA ACCGGATNGA 
    TTTATCCCGN ATCAAGCTCC AAGGTGATGC TTCGATGTTG TTTGGTTCCN 
    ACAAAACAAC CTGGTCTATT GANTTATGAA GAAACATGTC NCANNTCGAT 
    ATCTCNAAGG GTGATNTCCC TNAAAACACG TGGGNATCTT GGGACTNGAA 
    CCNNAATGGN GATTACCTGG GAATATCTCC GGCNGCANNG TNCTG

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2132486 [Map]; Strand: c
      • AT5G06865.1 - [+] show detail - other RNA
        Distance: 0; Region: exon2 (NonCoding)
      • AT5G06865.2 - [+] show detail - other RNA
        Distance: 0; Region: exon2 (NonCoding)
      • AT5G06860.1 - [+] show detail - polygalacturonase inhibiting protein 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-2148-1 - 5-prime edge 
    GGGGACGCAN CGCGNNCNAC NTACAGNCTG NCGGTCCGAN CNCGGATCAG 
    CGATACCGGG CCGTCAAACA CTNCGTGCNN TATAAGGAGG GTGTTTTTGT 
    CATTTTGGTT ACAGAGATCT TTAGACAAAC AGGTCGTGAG GAATGTGAAC 
    AAGAACAAGA GACACAATGT CGCTGTCTTA TCCATGGTGT TGGTTTTGAA 
    TTTTGATGGA AAGTGTTAGT GATACATATA CATACTATAT AGTGAGTGAT 
    ATAGACTTAG AGAGACGGAT TCGATTTGAT CTCTGTTTCC ACATGGACCG 
    TAATAATAGT CAATACATAT CATATAGTCA AGATGTCGGC GTTGAATATG 
    TTTGGGTAAT GCAATTACGC GTTGTATATA ATTAGGCTAT AACCGGTGCA 
    AGTTATATCT CCTTGAAGCA TTTGGAAATG TATACTGAGG CAATGTCTTC 
    ACCATCTAAT ACAACTTCTC AAAAGTTCAT CCAAATTTTA AGTAACCCAA 
    TTGATCTATC CAACAAACAT AAGATTTGAG AGAAAGTTTA GATTTTGGTT 
    CATATTTATA AGAAAATATC GAACAAAGTT TATGGTCATC TTCAAATCGA 
    TCCGACCCGT TGGAAGAGAT TATTACAAAC GGCTCTATTG AGATAAGTGA 
    TTTCTGTTTT TCTATGAACA ATAAATAAAA TAGTTCCCGA ANAAGAGCCA 
    AAGGGGNGGC

AT5G06860.1

Model type
Protein coding
Short Description
polygalacturonase inhibiting protein 1
Curator Summary
Encodes a polygalacturonase inhibiting protein involved in defense response. PGIPs inhibit the function of cell wall pectin degrading enzymes such as those produced by fungal pathogens. PGIP1 is induced by fungal infection.
Computational Description
polygalacturonase inhibiting protein 1 (PGIP1); FUNCTIONS IN: polygalacturonase inhibitor activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: polygalacturonase inhibiting protein 2 (TAIR:AT5G06870.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G06865.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT5G06860
Link
InterPro Scan - TAIR

AT5G06865.2

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT5G06860
Link
InterPro Scan - TAIR