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11-2177-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 18422300 [Map]; Strand: w
      • AT5G45470.1 - [+] show detail - Protein of unknown function (DUF594)
        Distance: 0; Region: exon1 (CDS)
      • AT5G45472.1 - [+] show detail
        Distance: -68; Region: promoter
    Flanking Genome Sequence: 11-2177-1 - 5-prime edge 
    GGTANNGCAA CGCGCATATN GNAAGTCNNA CTATNTNGCN CNAGGANCAA 
    CACCCGGGGG CGTGTGANAA CAGCCTGCGC CTATATAGGA NATNAGAAAA 
    ATTNAACCCG CGNNNGNACN TTTATATATN TNCCATTTAT NNTTAGNNGN 
    GTGTNTTNTN CATCTNTGCA AGGNCTTTGG CTAGCCTGCT NGCGTNAAAC 
    AATACAGACT TGCTTNGATC TNCCTTNANT NNCATNGGNN NAATNNNANT 
    TTNGACGNNC AGAATATTNA GGGTGGNTGN NTNCANGCTN NTATNGNTNT 
    NGATATGCCT NNTNTGGAAG AACTNGNGAG TNNNAGNCAA TGNGNNNNTG 
    AANNTGATNT TNNNAANNNN ANNNNNNNNN GANATNNNAN CGGGNNGNNA 
    GANNANGAGA TNCATNNNGN ANNNNGANAT GANNNNGNTG AANTNNNGGN 
    NACTGNNATG NNNGNGNNGN NNANNANANN NNNNNGGGAT NGNNNNTNNT 
    NATGNNGNGG NAANAGANNN NGGNNGGNNT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 18422195 [Map]; Strand: w
      • AT5G45470.1 - [+] show detail - Protein of unknown function (DUF594)
        Distance: 0; Region: exon1 (CDS)
      • AT5G45472.1 - [+] show detail
        Distance: -173; Region: promoter
    Flanking Genome Sequence: 11-2177-1 - 3-prime edge 
    CTTCTAANGG NTCACTTAGG ACTAACAGAT CAGTTCCAGA TCAACNAAGG 
    AGATGCCAGA GCCAAACTCA TCATAGGCAA GTGAGAGTGA GGAAGAACAA 
    CATTCCCCGT AATCTAAATT CGTTCTGCTT TTGTATTTCT TTCTACTTTC 
    TTCTGCTCAA AACAATGAAC TCTTCTTTTC TGCATAAAGA TGTGACATTT 
    GTAAGCT

AT5G45470.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF594)
Computational Description
Protein of unknown function (DUF594); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF594 (InterPro:IPR007658); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45460.1); Has 1360 Blast hits to 854 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1360; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G45472.1

Model type
Other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT5G45470
Link
InterPro Scan - TAIR