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11-2211-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 434921 [Map]; Strand: w
      • AT4G01010.1 - [+] show detail - cyclic nucleotide-gated channel 13
        Distance: 0; Region: intron6 (CDS)
    Flanking Genome Sequence: 11-2211-1 - 3-prime edge 
    GTTCAGACGA CTACATAGCA AACAGCTTCA ACATACTTTC AGGTTTGCTT 
    GGTCTCTTTT GACTGATCTC TCTGCTTCTC CAATCTCCGG TTCTGTTTGG 
    TTTAATTCGG TTTAACTGTC AGGTTTTATT CGGTTCAATG GAGAACNTTG 
    GGGTGCGTCT TTCATACAAG CGGCGTGGCG GAGACATTGC CGGAGGAAAC 
    TAGCTAGATC ATTAACCGAA GAAGAAGATA GATTCCGAAA CGCGATCGCA 
    AAACGCGAAC GCGATGCGGC GTCTTCGTCT AGCCTGGTTG CAACGTTATA 
    CGCGTCGCGG TTTGCTTCAA ACGCGCTTCG CAATCTCCGT ACAAACAACC 
    TTCCTTTGCT ACCTCCTAAA CCCTCCGAGC CTGATTTCAG TCTCCGAAAC 
    CCTTAAAATA TCTCTTACAC ATGTCCACTT ACCACTTGTA TAATATTGTG 
    TCAACGACAT TAAAGCT

AT4G01010.1

Model type
Protein coding
Short Description
cyclic nucleotide-gated channel 13
Curator Summary
member of Cyclic nucleotide gated channel family
Computational Description
cyclic nucleotide-gated channel 13 (CNGC13); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cyclic nucleotide gated channel 10 (TAIR:AT1G01340.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR