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11-2217-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 773529 [Map]; Strand: c
      • AT2G02750.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT2G02760.1 - [+] show detail - ubiquiting-conjugating enzyme 2
        Distance: -155; Region: promoter
    Flanking Genome Sequence: 11-2217-1 - 5-prime edge 
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCGA GGAGCTTTGA TGTGTTNGNT NTGTNGTTNA 
    CATTGNGCAT CTTTCTAGAT GATAAACCTA ACGAGACAGA GACACCGAGT 
    CTCGAATCTC GTGACCGGTG GAACTTCGCC TGGATGTGGT TTTGTCTCAC 
    CTCGCCTAAC AAGTTCACAT TCCCGCCTCT TCTTAAATCA TGTGCGAAGC 
    T

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 773529 [Map]; Strand: c
      • AT2G02750.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT2G02760.1 - [+] show detail - ubiquiting-conjugating enzyme 2
        Distance: -155; Region: promoter
    Flanking Genome Sequence: 11-2217-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGCCTCCATT GTCGTCGACA ACAAAACAAT GAAACAAAAT CAAAATCACT 
    GTTTTATTTG GTTTAAAAAT CTGGTTAAAA CCGGTTCAAT TTCGGTTAAG 
    TGCCACCTCG CATGGCCTGA ACAAAAAAAT ATCTGAAGTC TCTCTGACTG 
    TACACAGAGA GAGAGATAAA TAGATATGTG TTGATTAGAT CGAAGCT

AT2G02750.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT2G13600.1); Has 42683 Blast hits to 13925 proteins in 241 species: Archae - 0; Bacteria - 4; Metazoa - 114; Fungi - 172; Plants - 41670; Viruses - 0; Other Eukaryotes - 723 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G02760.1

Model type
Protein coding
Short Description
ubiquiting-conjugating enzyme 2
Curator Summary
ubiquitin conjugating enzyme UBC2. Homolog of the yeast RAD6 gene.
Computational Description
ubiquiting-conjugating enzyme 2 (UBC2); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin carrier protein 1 (TAIR:AT1G14400.2); Has 10642 Blast hits to 10588 proteins in 402 species: Archae - 0; Bacteria - 2; Metazoa - 4556; Fungi - 2331; Plants - 2015; Viruses - 26; Other Eukaryotes - 1712 (source: NCBI BLink).
Link
InterPro Scan - TAIR