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11-2236-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3238927 [Map]; Strand: c
      • AT3G10410.1 - [+] show detail - SERINE CARBOXYPEPTIDASE-LIKE 49
        Distance: -814; Region: promoter
      • AT3G10415.1 - [+] show detail - pre-tRNA
        Distance: -525; Region: promoter
      • AT3G10420.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -253; Region: promoter
      • AT3G10420.2 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -253; Region: promoter
    Flanking Genome Sequence: 11-2236-1 - 3-prime edge 
    ATAAACGGTA GCTCCATAGT CAGACACGTG TCAACAAGAT TGTCCAACTC 
    TCCACGTGGC GCCACGTGAA CCAGTTGCTT GAACGGCTAT GTTATCATCT 
    TTCCCTCTAC AATGGACCCT ACTTTGTTCT ATACAGATGC AGTTTCTGTG 
    TAATTAGATG CTTTGATCCT TTGGAATCTT CCACTAGTTT CAGTCTTCAC 
    GCATCATCAT ATTCCAAAAA AATGAAATGA AAAAAGAACT AATACTCAAA 
    ACGTTGTCGT TTCGTTGTGC TTCATAGCTC TTCTCCTCCT CAGCTTTTCC 
    TTTTTAGCTT CTTCATTTCT GCTTTCCAGA CAGATATACA CACCAGTAGC 
    TAAAACGAAA AGACAGAATC TTTTATTTAA TTCATTTTTT ATTTGAAAGT 
    ACATAATTAA AAAAAATAAT TAATTAATCG NGATGAGGGC GTTGAATT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3238811 [Map]; Strand: c
      • AT3G10410.1 - [+] show detail - SERINE CARBOXYPEPTIDASE-LIKE 49
        Distance: -698; Region: promoter
      • AT3G10415.1 - [+] show detail - pre-tRNA
        Distance: -409; Region: promoter
      • AT3G10420.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -369; Region: promoter
      • AT3G10420.2 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -369; Region: promoter
    Flanking Genome Sequence: 11-2236-1 - 5-prime edge 
    CCGTTTATTG CCAATTCGTT TGGAACTCTT TGACAAATTT AGCCCAAAGT 
    CGGAGTTGGT GTTTCTCGCA CGGCAGATGC AAAAGTCGTC AACTTTTTAG 
    CTCTGCAAAT TGAGATTTGA ACCAAAATTG CTGACTAAAT TAAACCAAAC 
    AAAAACCAGA CTAAATGAAT GAAATACAAG TCAACCCAAA CATTGTGTAT 
    CTACAACGAC GGTTCCTTAA TTTCTTGAGT CATCTTCGTT TTTTAGCCGA 
    ATGGGCTTTT AGGTGCTTTA CAAATAGTGG TTTAGGATTG GGCCTTCTAA 
    TCAGAAACAC ACCTTGTAGA ATATTACATT CACTATAAAA TGTAAGGTTT 
    ACATTCACGT GAGGCCCATA AGTGTTTTTG TAATAATTAA TTTAATATAT 
    AGTGTAAACT TAATATTAAT ATCAAACCGA CCTTAGCTCA GTTGGTANAG 
    CGGAAGACTG TAATGGGTAA TTCCAAAGAA ATCTTTAGGT CGCTGGTTCN 
    ATTCCGGCAG GTTGAATATT TTTAACATTT TATTTCCGTT TTAAATTATC 
    TGGGACCCAC ACTCATCCAT CTTTTGCTTN CATTNNACTC GCGTGCCTAC 
    NGGCGATTAC TANGCCAAAC GNTNTCTTTG GTNNAANGNA ACANAATCNC 
    ACNNTNTNTN TAANTNTNNN AAAANNCCTC NNTTTTTNGT GNNACNTNCA 
    CAAAANNNNA TCNNGAAGNT CNTCNANCNN NNNCCNCCNN TCA

AT3G10410.1

Model type
Protein coding
Short Description
SERINE CARBOXYPEPTIDASE-LIKE 49
Computational Description
SERINE CARBOXYPEPTIDASE-LIKE 49 (SCPL49); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 48 (TAIR:AT3G45010.1); Has 3569 Blast hits to 3439 proteins in 342 species: Archae - 0; Bacteria - 147; Metazoa - 678; Fungi - 883; Plants - 1454; Viruses - 0; Other Eukaryotes - 407 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G10415.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Tyr (anticodon: GTA)
Link
InterPro Scan - TAIR

AT3G10420.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G73170.1); Has 1488 Blast hits to 1479 proteins in 630 species: Archae - 20; Bacteria - 1182; Metazoa - 12; Fungi - 5; Plants - 115; Viruses - 0; Other Eukaryotes - 154 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G10420.2

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G73170.1); Has 1500 Blast hits to 1489 proteins in 625 species: Archae - 20; Bacteria - 1170; Metazoa - 12; Fungi - 5; Plants - 122; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink).
Link
InterPro Scan - TAIR