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11-2282-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25442615 [Map]; Strand: c
      • AT1G67855.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 0; Region: exon1 (5UTR)
      • AT1G67856.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-2282-1 - 5-prime edge 
    TGTGATTGAG ATTCTTCTTC TTCTTTTTGA ATCCTCATGA TCTTGGTCGT 
    CCTCTTTGTT CCTTGCCTCA TTGGTCTCAG AGCTCACCAT GTTGACAACA 
    GATCTTACCA TGTTCTTTAC TAGAGACACC TGAAACAACT GTGTTCATTA 
    CTAGCATTGG CATCACTCCT TCAGACGCTG TCGGGTAATG AGAAATACCC 
    ATTCTTCTTC CTATANATAC TGGNNCTGNT TCTAGANNNT TTCGCCCTCT 
    TCNNGNGGAA NANAACAACC CGGGGCGGGG ACCACNCCNG CCCCCACAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25442731 [Map]; Strand: c
      • AT1G67855.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 0; Region: exon1 (5UTR)
      • AT1G67856.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-2282-1 - 3-prime edge 
    CAATCACACA CTTTGAATCT CTGTGTGAGA ACAGAGGAAG CAGGAACGAG 
    AGAGAAGCTA TGGACTGTTG TGTGTGTCTG TGTGGGTTTA AAGAGGAGGA 
    AGAGGTGAGT GAGTTAGTGT CCTGCAAGCA TTACTTTCAC TCAGCTTGTT 
    TGGATAAATG GTTTGGTAAT AACCACACAA CTTGTCCTCT CTGCAGATCC 
    ATCCTTTAGA CTTTCCTTTT ATGGCTTTTC ACAATTTTTT TTTTAATGTT 
    TTCTAGTTTC TATTTTGGGA AACTCAAATT CTGTTGNGTC CACTTTGNGG 
    GTTTTGTAAG GTTTTTTATA ACNAATAAAT GTGCTTTTGA TANCTGNGCT 
    CTGATAGTAT GNGGTTCATG TTAACAACTG GATTNTNCNC CANTTTTNTT 
    GTNTTTCACA NCCAAAATAA AAGTAGATGT GACAATTAAA AAAACAGTGT 
    TACATNTTTT GCTTNTNTAA CANAATCTNT ACTAACTGAA ACTTANATAA 
    TACANTNGTN AAATTTTCTG GGCTTNAAAT TGAGAAATNT NTGNTTNTTT 
    ATNAANATNT NNATNTTTTG NTTNTTNNNN NNNT

AT1G67855.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G67856.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G24580.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR