Home
Mutant Lines
11-2365-1

11-2365-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 7552068 [Map]; Strand: c
  - AT1G21540.1 - [+] show detail - AMP-dependent synthetase and ligase family protein
    Distance: -1503; Region: intergenic
  - AT1G21550.1 - [+] show detail - Calcium-binding EF-hand family protein
    Distance: 1033; Region: intergenic
Flanking Genome Sequence: 11-2365-1 - 5-prime edge
```
ACTAGTATCT ATCTACTCAA GAAAAACCTA AAAGTTTTAT CTCAAATGAG 
AAAACCATCA TGATGCCAAA ATTGGCAAGT AGGTTGGCAT TTGATTCTGT 
GCATATGAAA TTAAAGGATC
```

3 prime edge [+] show sequence

Chromosome: 1; Position: 7552190 [Map]; Strand: c
- AT1G21540.1 - [+] show detail - AMP-dependent synthetase and ligase family protein
  Distance: -1625; Region: intergenic
- AT1G21550.1 - [+] show detail - Calcium-binding EF-hand family protein
  Distance: 911; Region: intergenic

GTACTTGTTT ACCCACATGG TCTAGCTTCA GTTAAAAAGG TTACATATGT 
CATGTTCGAA AATTAAATAC ATATGTTTAT CAAGTTCTGT AGCATCACAT 
ATATAATATC TTGAAGTCCC CAAAAATATT GAATAACCAG TTGTACCATG 
GGAACCAAGA AAAACCAATT CATGTCGGTT TAACAAGATT AGAGAATCCT 
AAAACGAAAC AACATAAGAT ATTCCCAACT AAAAGCACAC GACATAACCA 
TACGAAATAA ATCTTCAATT CATGATTATG GTATCAAGCA TTATACACTT 
TGAACAAAAC TGAAATAATT AGCAGATTAC ATTGAAACTG TTTACAAAAA 
TTATTCACAA TGATCATACG CTAATTAAAC AGTTTTTTTG CCACAAACTT 
CTTCACAATT TTTTTGTAAT AAACAGTTTC ACTATATTTT CTCTTCATCT 
CTTTCTTGGA TTTATTTATG TTAGTGAGCT ACTAATCTGA TTTTGCAGAA 
AGAATTAAGA AACATATATA CGAAGCCATT TATGAAGTTA GTTTTCATTT 
GCAAATTCCG TTTTGGTCTG TTAATATGGC TAGTGTTTTT TTTCTTCTTT 
TAAATGGGTT TGAAGGGTTT ATTATATATC ACGTGTAAAA CAGTTGACCA 
TAATGCTAAA TTATGCNTCN TACAGAGAAA CTACTAAAGA ACCAAATAGT 
CAAATTTTCA GCTAATTATA ACAGAATCTA GTCATATCGT CN

AT1G21540.1

Model type: Protein coding
Short Description: AMP-dependent synthetase and ligase family protein
Computational Description: AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G21530.2); Has 76629 Blast hits to 70171 proteins in 3593 species: Archae - 1132; Bacteria - 50179; Metazoa - 3309; Fungi - 3660; Plants - 2281; Viruses - 1; Other Eukaryotes - 16067 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G21550.1

Model type: Protein coding
Short Description: Calcium-binding EF-hand family protein
Computational Description: Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin like 42 (TAIR:AT4G20780.1); Has 8971 Blast hits to 8616 proteins in 1133 species: Archae - 0; Bacteria - 20; Metazoa - 2955; Fungi - 1509; Plants - 3114; Viruses - 0; Other Eukaryotes - 1373 (source: NCBI BLink).
Link: InterPro Scan - TAIR