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11-2423-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17978098 [Map]; Strand: c
      • AT4G38390.1 - [+] show detail - root hair specific 17
        Distance: 0; Region: exon9 (CDS)
    Flanking Genome Sequence: 11-2423-1 - 3-prime edge 
    GATACTTGGG ACACAAAGTA ACCATCCGTC CAAACGCCAA GAAACTCTAC 
    GAAATCTTCA AAAATAGACA CAACATGACA TGGGGTGAGT TCTCATCGAA 
    GGTCAGAAGA TACCAGACGG GTTTCATGGG GGAGCCAGAT GAAATGAAAC 
    CAGGAGAGGG GGAGTTCCAT GAGAACCCAG CCTCCTGCAT TTGTCGAACC 
    TCTGAAGCAA GAGTCAAAGA AAAAGCAAAA CATGTAAATG AAGATGACTC 
    ATCGGAGTAC TCAGAGATTG GTAATGTCCC CATATCCAGT AGAAGCGATT 
    TGGATCACTC ACAATTTGAT GAAGTGATCT TCTGAGACTA AACTCATGTT 
    TTTTTATGCA CGAATCAGCA TTGTTTGTCA ATAGAGAAAT TCTTTTTCAA 
    AAAAACTGTA ATGTCATTTA AGTCGCAAGG TTACAGATAG AAAAGAATAA 
    TGGTGTACAT ATATAGACCT TTTGTACATA CATATACAAT CCTTTTTCTT 
    CTTCTTAGCT CTCTCTTGTT TTGTTTCATT CATTCTTATG AAATCGTCAG 
    ATTATGCATT CCCGTTGATT CTTCCTCTCA TCTAATAAAC AAGTCTGTTA 
    CTTACACATT AGAAGGAAAG CAGAGAGACT CAGTTCCAGA TGTGATCGTC 
    GCATGGATCA CAACCTTCCT GAGCAATGTC TGTGATCTGA ACGCCGGCGT 
    CATANGACTT TCCAGCTTCC CAGTTAGCTG GAAGGACCCT CTGCN

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1463112 [Map]; Strand: w
      • AT5G04960.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 11-2423-1 - 5-prime edge 
    NGGGGNNGGG GGGNGNNNGA NATGGATATN GNGGNGGANC GAGNGGANAN 
    GNNNNNNTNT NTANCCGCAG CCAAANCGGT TATNCGATAA CGGTCGGTAC 
    GGGAATTTTC CCANTCTACT TTCATCATTG ATTAACACAG CTGGTNCAGC 
    TNAGCATCAA GCCGNNGCTC TNATGGTANG CAGCAGACTN ATCNNGNGTG 
    CNACAAGNGC NCCATGGACG CTTNCCANGA TACAANGNAC GCTCATGCAC 
    AACGTCAGNT TAACCGNNNT GGNGTCGATC CTCGGAACCG NCACTTNTTA 
    TATTNGGAAA CGCTGCGGCN GTNTNCNAAN AGNGCGGAGA TCACCANCCC 
    GGNCCGTGGG ANNNCGCNTG CCCTATAGGG GCGNNGCGNN NCNANGGCGN 
    NAGNGNTNAG GNGAGGGGGG GGNGNCGTNN CNTTCNTCNN NCNATGTCNT 
    NAAGAGGACG NGGCNCCCAA GATTNNAGAN NNNCCCTCNA CCAATCAAAC 
    NANNGGATTG ATGGGGGNGA GNAANGNNGN GNNNGANNGN CGGNTNNNNT 
    NNGNACCANT TTNGTGNNNA ATNCNTNCNG CGGNNCANNN GGNNNNNAAC 
    GCGNGNTNNN GANTGANATN NNNNGACCGN NGNCGCNCNA TGCNNGNAGT 
    NTAGNTGNNN NNNATTNTAT NGTNNCAGTG NTCGAANNAN GGGTNTNGNN 
    CNGGGGNGNG GGGGGCNCGG NACGATNCCC CGNNATNGAG CANNCAANNC 
    GGCGNNTNNC GANNNGAGTN NCCCNCNNCG GTNNGCTNAT NNNCGGAGCN 
    GGGNANNCCG GNAAGCGTGC NGGAACGNAG CNAGNNGNGN TGTTGANCAN 
    CGGAGGNGTN GCGCNGTGTN GANNNNCCCA GCNNCNGGNN NAGNCNNCGG 
    CNCGNNCGAN NANNGNNAGN GTNCGATNNA GGNNGNTNGT NTNAGNCNAT 
    NACGGNNG

AT4G38390.1

Model type
Protein coding
Short Description
root hair specific 17
Computational Description
root hair specific 17 (RHS17); CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT1G20550.1); Has 829 Blast hits to 827 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 829; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G04960.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily
Computational Description
Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: flower, root; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: root hair specific 12 (TAIR:AT3G10710.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR