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11-2432-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23459216 [Map]; Strand: w
      • AT3G63530.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -757; Region: promoter
      • AT3G63530.2 - [+] show detail - RING/U-box superfamily protein
        Distance: -781; Region: promoter
      • AT3G63540.1 - [+] show detail - Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: 11-2432-1 - 5-prime edge
    CGTATGGATG CCGGGAAAGT TGCAGACAAG CAAATATACA AAAAAAGAAC 
    AAATACCCAT TTGGTTGGTT TCTCTATGTT CAAGGCATTT GCTTACTATA
    TGCTTATTTA TTTATACCTA TATTAGAATT GATGATAATT AAAGGATCAC
    AAAACAAACT CCAGTTTATG TATCCCATTC TCGTTCTCAC CAAATTAAAT
    ACATTTCGAC AAGCAAACAT TGAAATTTCA AGAAGAAGAG ACAGTCTTGA
    AGGAGTCGCG AAGGTGGGTT AATGTATCGT GGTCGCGGTT CCACTCGGGC
    GCAGGGGCGT TTACGAAATG GGCGTAGAGC TTGTTCTTGG AGCAAGTGAC
    TGTGATCAGG CTGTGCTTTC CAACCCCATC TATCTCGTAC AGATAGTAGA
    CCTGCCCTGT CTCGTCCTTC CTCTCCTCCG ACACCACTTT GTCCGCGCCG
    GCTATCAAAT CCTGCAGCTC CACGTCCGAC AAGGCAAGGT TGTTCAGAAT
    CACATCCCTC GGCGCCAGCT GTCTGAATCC CGCCAGGAAT GTCAGGTACT
    CCTTCTCCGT CTTCTTCTTC GGGTTATAGA ATT
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23459100 [Map]; Strand: w
      • AT3G63530.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -641; Region: promoter
      • AT3G63530.2 - [+] show detail - RING/U-box superfamily protein
        Distance: -665; Region: promoter
    Flanking Genome Sequence: 11-2432-1 - 3-prime edge
    TCCATACGTA AAAAGTGTCC TCTATTATGA TAGTAGCTAG TATTATTTAC 
    TAGTGTCGAG TACTATTCAA TGGAGTTTCA ATTGCCCCTA CAAAAGAGAA
    GAGAGACTAT AGACTAGACA AGACAAGCAA AGGACATTGT TACAATTCTC
    ACGCCCAAGA GTTTCTCCAT CCATTCTTTT GTCTTTTCTT CTCTTTTATC
    CATGGATGGA TC

AT3G63530.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Curator Summary
Encodes a novel E3 ubiquitin ligase that acts as a central negative regulator of Arabidopsis floral organ size. Organ size is limited by restricting the period of proliferative growth, rather than the rate of growth and appears to act in a novel pathway, independent of ANT and JAG. Both mRNA and protein are expressed in all actively growing regions of the plant and the vasculature and the protein is rapidly turned over by proteasome-mediated degradation.
Computational Description
BIG BROTHER (BB); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G19910.1); Has 8059 Blast hits to 8045 proteins in 262 species: Archae - 0; Bacteria - 0; Metazoa - 2322; Fungi - 418; Plants - 4266; Viruses - 8; Other Eukaryotes - 1045 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63530.2

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Curator Summary
Encodes a novel E3 ubiquitin ligase that acts as a central negative regulator of Arabidopsis floral organ size. Organ size is limited by restricting the period of proliferative growth, rather than the rate of growth and appears to act in a novel pathway, independent of ANT and JAG. Both mRNA and protein are expressed in all actively growing regions of the plant and the vasculature and the protein is rapidly turned over by proteasome-mediated degradation.
Computational Description
BIG BROTHER (BB); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G19910.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63540.1

Model type
Protein coding
Short Description
Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein
Curator Summary
Conceptual translation of this open reading frame gave the sequence of a 229-residue hypothetical protein that contains the same sequence as the mature A. thaliana chloroplast luminal 19-kDa protein linked to a putative signal sequence.
Computational Description
Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: oxygen evolving complex, extrinsic to membrane; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123).
Link
InterPro Scan - TAIR