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11-2451-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1463242 [Map]; Strand: w
      • AT5G04960.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-2451-1 - 5-prime edge 
    ATTAACACAG CTGGTCCAGC TAAGCATCAA GCCGTAGCTC TAATGGTAAG 
    CGCAGACTTA TCTGTGTTCT ACAAGTGCAC CATGGACGCT TTCCAAGATA 
    CAATGTACGC TCATGCACAA CGTCAGTTTT ACCGTGATTG TGTTATCCTC 
    GGAACCGTTG ATTTTATATT TGGAAACGCT GCGGTTGTAT TCCAAAAGTG 
    CGAGATC

AT5G04960.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily
Computational Description
Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: flower, root; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: root hair specific 12 (TAIR:AT3G10710.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR