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11-2480-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1678713 [Map]; Strand: c
      • AT1G05615.1 - [+] show detail - Domain of unknown function (DUF313)
        Distance: -443; Region: promoter
      • AT1G05620.1 - [+] show detail - uridine-ribohydrolase 2
        Distance: -445; Region: promoter
      • AT1G05620.2 - [+] show detail - uridine-ribohydrolase 2
        Distance: -867; Region: promoter
    Flanking Genome Sequence: 11-2480-1 - 5-prime edge 
    TGTGAGTGCA ACGAATCATG ACCGTTTCTT TTTGTTACGT GAGCTGTAAG 
    AAATAAGCTA CAGAAATGTA AGAGGAAGAG AGTGTGTGGT TTTAGTTTTA 
    GGTGAGTGGT TTAATTTAAT ATGGATTATC CCGTAAGCAA AACAAGACCT 
    TTGAATATCT CTTTTAACCA ATTGAAAAAC CCTTATAGGC TTATAGCTAA 
    ACCTTAAACC CTAATCTTTT GTTTTGCTAA CACTAGAATT TGTTTTATTC 
    ATTAAAAACG AAGGAAAACA ATTTTTCTTT TTTAAAAAAA AGTGGATAAT 
    CTCGAAATTC GCTTCTCTAG CTAATCCCAT ATAGATTATA GGAACAGAAG 
    AAAAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1678829 [Map]; Strand: c
      • AT1G05615.1 - [+] show detail - Domain of unknown function (DUF313)
        Distance: -559; Region: promoter
      • AT1G05620.1 - [+] show detail - uridine-ribohydrolase 2
        Distance: -329; Region: promoter
      • AT1G05620.2 - [+] show detail - uridine-ribohydrolase 2
        Distance: -751; Region: promoter
    Flanking Genome Sequence: 11-2480-1 - 3-prime edge 
    CACTCACATA AGGTAATTAA GGAAACCGAG TCTGACNTAT ATACTGTATG 
    CCTCTGAGAG ACAAAAACAG AGCCGGTATT GTGTAAGTTT TTCCGGTTTG 
    GTACATTTTT CTCTAAACCA AAATGACATG GACCAAGTGG TAAAAAATCA 
    CACAGAACCG GTAGAAACTT TGTTGAGAAA ATCTCTGGGG CCAAAGCATC 
    ATCATCTCTA ATGTAGTAGA TCCGTCGAGA GTAAGAACTC TGACTAGAAA 
    AATATGGAAA GAGTTAATGG AAAACGTGAC TGAATAAAAT TCGATTTGTT 
    TATACAATAA AGAAACAGAC AAACAGAGGA TAACAAACCC ACGTTTGTAG 
    ACTTGGAAAA GAGACACCTT TTATTTTTTT TATGAACTCT TTGGNGCTAG 
    ATCATAATTG TATTCCAAAA GTTTNTTCTG NNGGGGGTAA AAAGCCCGGA 
    TTTAGAGAGA AATTTAGGTT TNTTTTTTTT CNCGGGNCGN GGGGGCCNTN 
    AAGAGTNNCC CCCNTNTNCC NNGGGGNNAG NGGGNCGGGG GANGGNGAGA 
    CCNNANNAGN AACNNNNNNN ANNNGNGGNG NNCGGGGGAN CGGNNANGNG 
    GTGNCNCNNT NNGGNGGGGN NGGGNGGGNA GNGNANNNNG ANNGNGANAG 
    GNNNGNGNNA GGANGGNTTG NGGGAGGNNC GTNNGGTACG AGAAGTNCGA 
    NGGGNCNGGG

AT1G05615.1

Model type
Protein coding
Short Description
Domain of unknown function (DUF313)
Computational Description
Domain of unknown function (DUF313) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF313) (TAIR:AT2G24670.1); Has 82 Blast hits to 82 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05620.1

Model type
Protein coding
Short Description
uridine-ribohydrolase 2
Computational Description
uridine-ribohydrolase 2 (URH2); CONTAINS InterPro DOMAIN/s: Inosine/uridine-preferring nucleoside hydrolase (InterPro:IPR001910); BEST Arabidopsis thaliana protein match is: uridine-ribohydrolase 1 (TAIR:AT2G36310.1); Has 6369 Blast hits to 6297 proteins in 1349 species: Archae - 75; Bacteria - 4652; Metazoa - 179; Fungi - 246; Plants - 186; Viruses - 0; Other Eukaryotes - 1031 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05620.2

Model type
Protein coding
Short Description
uridine-ribohydrolase 2
Computational Description
uridine-ribohydrolase 2 (URH2); FUNCTIONS IN: hydrolase activity, UDP-glucosyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Inosine/uridine-preferring nucleoside hydrolase (InterPro:IPR001910); BEST Arabidopsis thaliana protein match is: uridine-ribohydrolase 1 (TAIR:AT2G36310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR