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11-2557-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5594342 [Map]; Strand: w
      • AT4G08765.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 11-2557-1 - 3-prime edge
    NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNTNNNNA 
    NNNNNNNNNN ATTGCAAAGC TGNANNATGT TNTNACGCGA NCGCTGCCNA
    CCGGTTNNAT CCNTANGANT CTAATTATAN AACTNGACGT TGATCNCNTN
    ATCGAGCAGG CTTGCNTCTG GANANATNGA CCTNGTNTCT GGGAGTANAA
    CAANCNCACC CTGTCTACTA GCNATAGCCN AATTTGGACT GTTATNATCA
    TNTTCTNTTG CTACAGCACN CTCAGNGAAA GGAAAACNTN CCTCCTATAA
    AGCTACATTT TGGGAAACAA AAATTCTTTC AGTTNGAAAA TCCATCACTA
    ACCATCCTTT CTTTCGAAAN NGATATCCAN NAAAAANACA TCGANCACTG
    CNATCTTCAA ATTTGTNATT CGAACGTNTT ACTACCTTTG CATAGCAAAG
    GCACCCAANT ATCCCTTATN TNATCTTATN NANGGNGNGA NTCNGAAATA
    ATNCTNCNCN TGGGGTNNCC CCCTNCCANN NAAGANAGAA GGCGNCNNGT
    TGATCAAATN ANNAANNNCC TCGATTGANT TCTCCCCNAA CACNAANTNN
    GNANGATACC ANNACCGGAG CCGCNNGNCC CACTCCGNNN CNNTNATNGC
    NGNTTNCGNN CGCNNNNNNN NCATACTGNG GNNNNACNAN CNANNANNAC
    TNNCNNNNNC TCNTAANNCG TCTCNCCCNN CAACGNCNTC TTNGNNANTC
    TATCNCCACA CGTATNANGC NANTNNNGCN NCGCGCNNCN NATNGNNANA
    TCNTTTATTN NGNGTCNACC TNTGCANCCN TNTCAACCGC NACNNNTAGT
    NNNTAATCCN ACNCNNNTTC CGTGACNNNN GNCNNNNGNC CCTNNNNTCG
    NAATACTNNT TANNNTC

AT4G08765.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 5.2e-158 P-value blast match to GB:AAB82754 retrofit (TY1_Copia-element) (Oryza longistaminata)
Link
InterPro Scan - TAIR