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11-2598-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17493320 [Map]; Strand: c
      • AT2G41900.1 - [+] show detail - CCCH-type zinc finger protein with ARM repeat domain
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-2598-1 - 5-prime edge 
    GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT CACACATCAG GCTCATCACC ATCAAACGAT 
    GACGAAGATC TCAACTTACC AAGTGCTTCT GAGCTCATTC CCCAATCCGG 
    TTGACCATTT GAAGATCCCC ATTTTGATGA CCATGTGTTG TTGTTTACCG 
    GTGAACCAAC GATTGGGCTA GAGTTTGTTC TGAGCTCTCT GGAGCTAAGG 
    CTACGGAACT GATGTTGCTG CTGCTGCTGC TGCTGCTGCT GCTGTTGCTG 
    TTGTTGTTGC TTCACGCACT GAGCCAACAT GGAAACCCGA GCACTCATGG 
    GTGATATTGG TTCAACAACA TTCCGAGGAG ACATTCTTCC TCCACCTGAA 
    AACAATGAGT GGTCAACGCT CTTTGGTGAA GAAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17493319 [Map]; Strand: c
      • AT2G41900.1 - [+] show detail - CCCH-type zinc finger protein with ARM repeat domain
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-2598-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCA 
    TGATCATGGG TCCAGTCACT GGTGAAGGAG ACTCCAGCAG AAGCCAAAGA 
    GAAAGCAGCA ACATCTTCCT CAGGGGAACA CGTGATGAAG CAGCCAAATC 
    CGGTTGAACC GGTAATGGAT CATGCTGGGC TAGAAGCT

AT2G41900.1

Model type
Protein coding
Short Description
CCCH-type zinc finger protein with ARM repeat domain
Computational Description
CCCH-type zinc finger protein with ARM repeat domain; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: CCCH-type zinc finger protein with ARM repeat domain (TAIR:AT5G12850.1); Has 5399 Blast hits to 3519 proteins in 384 species: Archae - 10; Bacteria - 312; Metazoa - 2497; Fungi - 280; Plants - 489; Viruses - 8; Other Eukaryotes - 1803 (source: NCBI BLink).
Link
InterPro Scan - TAIR