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11-2603-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21936030 [Map]; Strand: w
      • AT5G54050.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: -35; Region: promoter
    Flanking Genome Sequence: 11-2603-1 - 5-prime edge 
    AGTAGAAGAC ATTTTTTTCT AATAAAAATT ATAAGAACAA AAAGAGAGAA 
    AGCAGTTGAG TTTCAGTTTC ATTGGAACTC ATTTAATGGT AATTGGCGCA 
    TACTGCCAGC TAATCGAAAA TAAAAAATAA ACAAACCAAC TAATAGTAAT 
    AACAATAAGA TATGACCTCA GTCCCCAGTC ATTTAAATAC GATCTAGACA 
    GAGTTGTAAT GTGCCAAAGT CGTCGCATTC TTAAGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21935914 [Map]; Strand: w
      • AT5G54050.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-2603-1 - 3-prime edge 
    CTTCTACTGA TGTCGAAGTA GTCACCTTTC CGTTTCATGA TCATCCTTTA 
    TCATGTTGTG ATGATCCTGT TGCTGCTGAA TTTTACTGCT CATTGTGCTC 
    TCATTATCAT TCCCTCAGTT GGCAAGTATT CAGGTCCGGC GTATGGCAGA 
    ATGAAGTGGA GCCATGGTTT AGGTAATAAA ATTATAAAAG GCATATTTGT 
    TTTAAGAAAA TTTAGGTCTT ATATGTTAAA ACAAAATTTT CTAAGTTTTT 
    TTAAATTTTT TGAATTTATT GGCGAGGTTT TTTTTTTNAA TTNNAATTTG 
    TNNAATTTNA AAANNNANCT TTTNAAAAAN AATAGGTNAA GTTTNAAAAT 
    TTTNAAATNN AATTNCATNT TCATNTNCAA AATTTNAAGG GTTTTTTTNA 
    ATTNGNGGGG GTTTNTTTNN CCANNCNTNG GGGTTNACCN TTTCAGTTAA 
    NAAAATTNTA GAAAAANGNG TNGTNAANAA ATTTTATNAN AAAAATTTNG 
    GTTTTAAAAA AAAANAATTT CCTAANCCCT TNCAAAATTT TNTTTTNCCN 
    TNGATTAAAG CTNCCANCCN GGGCCGNNNA CCACCCGNGN NNNNNNA

AT5G54050.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; INVOLVED IN: intracellular signaling pathway; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G54040.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR