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11-2801-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1517956 [Map]; Strand: w
      • AT1G05230.3 - [+] show detail - homeodomain GLABROUS 2
        Distance: -708; Region: promoter
      • AT1G05230.1 - [+] show detail - homeodomain GLABROUS 2
        Distance: -708; Region: promoter
      • AT1G05230.2 - [+] show detail - homeodomain GLABROUS 2
        Distance: 0; Region: intron2 (5UTR)
      • AT1G05230.4 - [+] show detail - homeodomain GLABROUS 2
        Distance: 0; Region: intron2 (5UTR)
    Flanking Genome Sequence: 11-2801-1 - 3-prime edge
    TNAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCAC 
    GTTGGTTGTA AGTTGTATAA TAACTATATG TTGGTCCGTC GCACAGGTGC
    ACAGATATAA TACTATTTTT TTCATTTCAA TTTTTTTTTC TTTCTTAATC
    GCCAAATAGT AGTTTACACC TTTTTCCTGA AGAGTTTTTT TTTTTNNAAA
    ANCNCCNAAG GATNNTNTTA AATAAAATTT NGTTTNGTNC NCCCAAAAAN
    NTGGTTTTTT NANNAANCNG GANANAGNGG GGANTTNNTT NGNCCCNCCT
    TTTCCCCNTT TNNTTNGCTT NNANNAAAGN AGCCCANNNT TTNTTTTTTN
    GNNTTNTTTT NCCTNNCCCN TNNAAANNAA ANCNGANNAA AANCCCNNAA
    ANTNGNAAAT NAAANCCCCN NCCNNNAANN CTTTTNTNGG GNAAAAATTT
    NAANGTTTTT TNTTNGNNCN NNAATNGNTT CCCNNNNCCC CNNCNTTNNA
    TTGNNCNNTG NAANNAACCN NAGTTTTTNT TCCNNCCGGN GNANAAGTTT
    TTTNNTTTNN TTTAAAANGG GAAAAAAANN GGNGGTTCNA AANANTTTGG
    GGNTTNGGGA AATTTCNTTT TTTNGGGGNG GGNTTTNCAA NAANNAAANA
    AATTGGGNAN GGAAGNGNTT TTTTAAGNAN GGCCCNTTTT TNCTNGGCTT
    CCAATAAGGG GGGGCCTTTG NTTCCCAAAA ANNTCCCAAN TTTTGGGGNG
    GGNNAATNNN NANGGNNNAA NTTNCNAAAA AAAAAANAAN NCNCCCNNNA
    GAAAANNTT
  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1517961 [Map]; Strand: w
      • AT1G05230.3 - [+] show detail - homeodomain GLABROUS 2
        Distance: -713; Region: promoter
      • AT1G05230.1 - [+] show detail - homeodomain GLABROUS 2
        Distance: -713; Region: promoter
      • AT1G05230.2 - [+] show detail - homeodomain GLABROUS 2
        Distance: 0; Region: intron2 (5UTR)
      • AT1G05230.4 - [+] show detail - homeodomain GLABROUS 2
        Distance: 0; Region: intron2 (5UTR)
    Flanking Genome Sequence: 11-2801-1 - 5-prime edge
    GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT TGACATAAGG CCTGGGTGAT GTATTAATTT
    TTTCCAGCTA TTTCTTATCA TCATCATCGT ATTTAAACGT TTTTATTACA
    CACATTAATA TGTAAATGTA TACTACTACT ATAAAGTATA TACACNGTGT
    TTATATATAA AACCAAACGT ATAATGAAAA TAAGGATATA CGAAGAGAAT
    ACAAACCTTT CTGTTTTTTT TGGTAGGCAA GGGAATACTA ACCTTTAATC
    TTTCCTCTTT ATTGTTTTCT TGAAGGTTTC ATCTCTGACT ATGCAGAAAT
    TGATAAGATT ATTTAAAGAA GAATACAATA AATCAGAAAG TCAGAAAGCA
    AATTAGGAGA GGAATGAAAG ATATTAGAGG CAAGAAATCA ATTAATTAAT
    GCTAAAGAAG GCAAAATTTA AGACAAAATA TAGATGACTA ACTGAAAATT
    CAACATACAG GATATATTAA ATTATAAAAA AAAANCNTCN TNAAAGGGAN
    AGTTTTNTAA AAANNCTAAA AAAACNGAAG NGTANNGGNT AACCANCCCG
    GGCNGNGNAC NACCCGTGCC CNT

AT1G05230.1

Model type
Protein coding
Short Description
homeodomain GLABROUS 2
Curator Summary
Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes. The mutations do not affect trichome growth or branch number.
Computational Description
homeodomain GLABROUS 2 (HDG2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, trichome morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1); Has 8730 Blast hits to 8651 proteins in 460 species: Archae - 0; Bacteria - 0; Metazoa - 6110; Fungi - 222; Plants - 2153; Viruses - 0; Other Eukaryotes - 245 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05230.2

Model type
Protein coding
Short Description
homeodomain GLABROUS 2
Curator Summary
Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes. The mutations do not affect trichome growth or branch number.
Computational Description
homeodomain GLABROUS 2 (HDG2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, trichome morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1); Has 8732 Blast hits to 8653 proteins in 460 species: Archae - 0; Bacteria - 0; Metazoa - 6111; Fungi - 223; Plants - 2153; Viruses - 0; Other Eukaryotes - 245 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05230.3

Model type
Protein coding
Short Description
homeodomain GLABROUS 2
Curator Summary
Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes. The mutations do not affect trichome growth or branch number.
Computational Description
homeodomain GLABROUS 2 (HDG2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, trichome morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05230.4

Model type
Protein coding
Short Description
homeodomain GLABROUS 2
Curator Summary
Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes. The mutations do not affect trichome growth or branch number.
Computational Description
homeodomain GLABROUS 2 (HDG2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, trichome morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1).
Link
InterPro Scan - TAIR