1. Home
  2. Mutant Lines
  3. 11-2820-1

11-2820-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 449935 [Map]; Strand: c
      • AT4G01030.1 - [+] show detail - pentatricopeptide (PPR) repeat-containing protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-2820-1 - 5-prime edge 
    TTGAAGAGAA TGCAAATTGC TGGTCTGAAG CCAAGCACGA GCTCAATTAG 
    TAGTCTTCTT CAAGCTGTAG CTGAACCGGG GCATCTTAAA CTTGGGAAAG 
    CGATCCACGG ATACATATTA AGAAATCAGC TTTGGTACGA TGTGTATGTA 
    GAAACCACCT TGATCGACAT GTATATTAAA ACTGGCTACT TGCCTTACGC 
    CCGGATGGTT TTTGATATGA TGGATGCGAA NAACATTGTT GCTTGGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 450051 [Map]; Strand: c
      • AT4G01030.1 - [+] show detail - pentatricopeptide (PPR) repeat-containing protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-2820-1 - 3-prime edge 
    CTCTTCAATA CAGCAATGGC ATCTTTGGAT AAGCCTTTAG AAGCATAACC 
    TGACAAAAGA GAGTTCCATG TCACTATATC TGGCTTCAGA CCACATATCT 
    CCATCTCGTC CAGGAGACCG ATAGCATCAT CTACATAACC AAGTTTCGTA 
    TAACTCGATA AAATCGAGTT CCACGAAGAC AAATTCCGGT CTTTCATCGA 
    GTTAAAAACT TTCCTGGATA ATTCAAGCT

AT4G01030.1

Model type
Protein coding
Short Description
pentatricopeptide (PPR) repeat-containing protein
Computational Description
pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G20230.1); Has 44944 Blast hits to 14972 proteins in 296 species: Archae - 1; Bacteria - 32; Metazoa - 191; Fungi - 174; Plants - 43677; Viruses - 0; Other Eukaryotes - 869 (source: NCBI BLink).
Link
InterPro Scan - TAIR