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11-2837-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5557245 [Map]; Strand: c
      • AT1G16240.1 - [+] show detail - syntaxin of plants 51
        Distance: -404; Region: promoter
      • AT1G16240.2 - [+] show detail - syntaxin of plants 51
        Distance: -442; Region: promoter
      • AT1G16240.3 - [+] show detail - syntaxin of plants 51
        Distance: -404; Region: promoter
      • AT1G16250.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 11-2837-1 - 3-prime edge 
    CTCTCGAGTA CGATTCGGTT CATGTAAGTG TTAGCTCTCT TGTTCTTCCT 
    TCACAAAGTT GAATCTAAAT CTCAATCCTT TACCTTTTCT CTTCAAAATC 
    ATGTTTTGTC TTAAAACATT GAATGTTGAT TATTGATTGA ATAAGTCTGA 
    TCGTTAGTGG CTGAAACTTG TTTTCAGGGA ATCAATCGAG CAGTCTATAA 
    TCCCAGGTTT GCCTGATGAT TTGGCTTTGA GATGCATAGC GAAGCT

AT1G16240.1

Model type
Protein coding
Short Description
syntaxin of plants 51
Curator Summary
Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.
Computational Description
syntaxin of plants 51 (SYP51); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endosome membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012); BEST Arabidopsis thaliana protein match is: syntaxin of plants 52 (TAIR:AT1G79590.2); Has 837 Blast hits to 837 proteins in 196 species: Archae - 0; Bacteria - 4; Metazoa - 265; Fungi - 234; Plants - 241; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G16240.2

Model type
Protein coding
Short Description
syntaxin of plants 51
Curator Summary
Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.
Computational Description
syntaxin of plants 51 (SYP51); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endosome membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012); BEST Arabidopsis thaliana protein match is: syntaxin of plants 52 (TAIR:AT1G79590.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G16240.3

Model type
Protein coding
Short Description
syntaxin of plants 51
Curator Summary
Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.
Computational Description
syntaxin of plants 51 (SYP51); CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012); BEST Arabidopsis thaliana protein match is: syntaxin of plants 52 (TAIR:AT1G79590.2); Has 550 Blast hits to 550 proteins in 163 species: Archae - 0; Bacteria - 4; Metazoa - 169; Fungi - 163; Plants - 161; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G16250.1

Model type
Protein coding
Short Description
Galactose oxidase/kelch repeat superfamily protein
Computational Description
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT3G63220.2); Has 9062 Blast hits to 5094 proteins in 277 species: Archae - 4; Bacteria - 620; Metazoa - 6949; Fungi - 23; Plants - 1110; Viruses - 34; Other Eukaryotes - 322 (source: NCBI BLink).
Link
InterPro Scan - TAIR