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11-2979-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1662877 [Map]; Strand: c
      • AT1G05575.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaer...
        Distance: -690; Region: promoter
      • AT1G05577.1 - [+] show detail - Domain of unknown function (DUF966)
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: 11-2979-1 - 5-prime edge 
    GCTCCAAGCA NGCCTTCCAT GGCTNCATTA TGCTCGTAAG CTCTGCTTTA 
    TATCACTCAT NATGTTCATA ACTTAAATTT ATATTGNGAC GTTTATAATT 
    TATAATATAG GCAATGTGGG AAGTTGTTCA AACCTGAGAA GATGCATTCA 
    CACATGAAAT TATGTCGAGG GATGAAGAAT T

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1662993 [Map]; Strand: c
      • AT1G05575.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaer...
        Distance: -806; Region: promoter
      • AT1G05577.1 - [+] show detail - Domain of unknown function (DUF966)
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 11-2979-1 - 3-prime edge 
    CTTGGAGCAA CCTTTGGTTT ACAAAACTCA ATTGTCTCTT TCATCTTTAT 
    GCCACTCCAT GCTCCTTCGA AGCT

AT1G05575.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobic respiration; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31945.1); Has 63 Blast hits to 63 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05577.1

Model type
Protein coding
Short Description
Domain of unknown function (DUF966)
Computational Description
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF966 (InterPro:IPR010369), Uncharacterised conserved protein UCP031043 (InterPro:IPR021182); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF966) (TAIR:AT5G59790.1); Has 167 Blast hits to 166 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 166; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR