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11-3161-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28966028 [Map]; Strand: c
      • AT1G77095.1 - [+] show detail - transposable element gene
        Distance: -661; Region: promoter
      • AT1G77100.1 - [+] show detail - Peroxidase superfamily protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 11-3161-1 - 5-prime edge 
    CCCGGAATTT TTTCAAATCC TGAGGTCAAA GTGTCCCCAA GGCGGTGATG 
    TTAATGTCAG GATTCCGTTG GACTGGGATA GCCAATTTGT GTTTGATAAC 
    CAAATCTTCC AAAACATCAA AAATGGCAGA GGTGTCATTC TATCGGACTC 
    TGTTTTATAC CAAGACAATA ATATGAAGAA AATCATTGAT TCATACTTAG 
    AAACTAATCA AAGTTCAAAG GCTAATTTTG CTGCGGATTT CACTAAAGCC 
    ATGATAAAGA TGGGTGCTAT CGGAGTGAAA ATCGGTGCTG AAGGAGAGAT 
    TAGACGTTTA TGCAGTGCTA CAAACTAGTT TCCAAGATCT CATACATAGT 
    TAAGTATAAC AATTTGAGTT TGTTGGTTTA ACAAAATAAA CAAATTTGAA 
    TTATGAAAAG ATATATTTAT ACCAATTATT GTAGCATTGC ATATACGTCT 
    ATTAATCTAT TAGATATTCA ATCCCACCAT ATTGGAATCG GAAAATAAAA 
    AAGATTTGAA TAAATCCTAG TTTGTTTCTT ATCAAGATGT TTCCAAATAA 
    AAATATAGTG ATTTTTCAAA TATTTCTGTA AATAGAAAGT TATTATATAA 
    GTATTTGTTA TCAAAATTAA TGGTCACACA CAATTCTTTG TAAGCTGGAT 
    CAACAAAATG ATGATATTGG GCTACCTTCA AAGTAGGTTG CTTTGGTTAG 
    ACATGTCAAC TTAAGGGTAA ATCTATGCAA ACATAGCCAA ATATAGCA

AT1G77095.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 9.8e-14 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)
Link
InterPro Scan - TAIR

AT1G77100.1

Model type
Protein coding
Short Description
Peroxidase superfamily protein
Computational Description
Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT4G25980.1); Has 4380 Blast hits to 4357 proteins in 274 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 206; Plants - 4128; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).
Link
InterPro Scan - TAIR