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11-3256-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1364099 [Map]; Strand: w
      • AT2G04090.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-3256-1 - 5-prime edge 
    GGGATAAACT AACAAAAGGG TGGTTATGGC ACAGTAGAGA AGAGGAAGAA 
    CCAAACCCTG AGTCTGGAGA AACCGAGTCA AAGGTTGTTG CACCGCTTGA 
    GCTAACAATG CCGGTATAAG ACAAACCGCG TAAGAACCAG CTACCTTGGA 
    GATGTCAGGA TCTTGTCCGA ATGAAATCAA GAGTTTGTCC ATGTAAAACC 
    AGAGAATCGA TATGAGAACA ACTATGGGTA CGTTTGAGAC TATTGCAGAG 
    TACGTATAAG TTCCGATTTT AGTGTATTGT TTTGCTCCAT AAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1364040 [Map]; Strand: w
      • AT2G04090.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-3256-1 - 3-prime edge 
    ATNAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGGTTCCATA TACCAGTTTG TTTGATTCTG GTTTACGCGT TTGGTCTTGG 
    AAGCAACGGA GCCGCTTTGG CTATTGGTTT GTCTTACTGG TTTAATGTCT 
    TGATTCTTGC TTTATATGTG AGATTTTCAA GTTCTTGCGA GAAGACTCGC 
    GGTTTTGTGT CTGATGATTT CGTGTTGAGC GTCAAGCAGT TTTTTCAGTA 
    TGGGATACCT TCGGCAGCAA TGACAACGTA AAAACATTCA TCTTCTTCAT 
    CGTTGGTGCA TTCTTTTCTT TCCTCGGTTG ATTTGTTTTT TGTTTCTATA 
    TGCAGCATAG AATGGTCGTT GTTTGAGCTC CTTATCTTAT CTTCAGGACT 
    CCTCCCAAAC CCGAAACTCG AGACCTCTGT TCTTTCCATT TGGTAATCTA 
    TCTTTCTCTC TGGATCTTTG TCTCCCTTTT TACATATATG TCTAGTATAT 
    ATCAGGAGGG ATTGTCTTAA ATATATAGGT CTAGACGTCT AGTGAGTAAA 
    TATTGGTTAA TTAAATTAGA TATAGTTTAT CGAATT

AT2G04090.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT2G04100.1); Has 9714 Blast hits to 9643 proteins in 1968 species: Archae - 172; Bacteria - 6792; Metazoa - 143; Fungi - 326; Plants - 1316; Viruses - 0; Other Eukaryotes - 965 (source: NCBI BLink).
Link
InterPro Scan - TAIR