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11-3365-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23402284 [Map]; Strand: c
      • AT3G63360.1 - [+] show detail - defensin-related
        Distance: -693; Region: promoter
      • AT3G63370.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-3365-1 - 5-prime edge
    TTTACCACAA AGCTCGAGAA CGTAGGCAAA GGCTTCGACT GGAGAGTTGT 
    TTTCGCTGAC GTCCAGCCGT TGAAAATCTT CAGTTAGGAC TCCGTCGAAA
    CAAGCGAGCT TCGGAGAAGG GACTTGGACG GGCNTGATTG CTCTGTCGGA
    ATGGGTTTCT CCGGCAGGAT AGCTCTGTCG GAATACTACA ATGCAGACGA
    ACCCTTGGAA ACGAAATCGC CGAAGCAGAG TACATCATGT TACTCAGTAG
    TCTCATGTTA GTTACCGCGT ATTCCATTTA TGTAGCCATT GTCCAATCAT
    CATCATCATC GGTAAACCAT TGGTGTTCGT GTTTCCGAAT TATCTCTCTC
    GTTTTTTTCT TTTTCGGGTC AAGCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23402400 [Map]; Strand: c
      • AT3G63360.1 - [+] show detail - defensin-related
        Distance: -809; Region: promoter
      • AT3G63370.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-3365-1 - 3-prime edge
    GTGGTAAACG TAGAGCTGTC TCACAAGGTC GGCAGCTGCA TTCGCGCATT 
    TTCAAGACTT TCCCCTCTTT CGAATTAGAT TTTTTGGCCG GCAAGCT

AT3G63360.1

Model type
Protein coding
Short Description
defensin-related
Curator Summary
Encodes a defensin-like (DEFL) family protein.
Computational Description
defensin-related; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Knottin (InterPro:IPR003614); Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63370.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Curator Summary
Encodes a chloroplast RNA editing factor.
Computational Description
ORGANELLE TRANSCRIPT PROCESSING 86 (OTP86); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G21300.1); Has 48148 Blast hits to 13528 proteins in 241 species: Archae - 0; Bacteria - 4; Metazoa - 44; Fungi - 62; Plants - 47536; Viruses - 0; Other Eukaryotes - 502 (source: NCBI BLink).
Link
InterPro Scan - TAIR