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11-3483-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1561335 [Map]; Strand: c
      • AT3G05410.2 - [+] show detail - Photosystem II reaction center PsbP family protein
        Distance: 0; Region: exon3 (CDS)
      • AT3G05415.1 - [+] show detail - transposable element gene
        Distance: -747; Region: promoter
      • AT3G05420.1 - [+] show detail - acyl-CoA binding protein 4
        Distance: -443; Region: promoter
      • AT3G05420.2 - [+] show detail - acyl-CoA binding protein 4
        Distance: -443; Region: promoter
    Flanking Genome Sequence: 11-3483-1 - 5-prime edge 
    CCTCTGACCA AGCTGACTCT GGCGCTTGAG CGTTCAGTGT ATAAAGCCGG 
    CCACTGTGAG CGCAACAAAC GGCTACATTA TGCCGCCGGA AAAGAGGTGA 
    TTCGACTTTA AACTCCAACT CGTAGTACTT CAAGTTTCTC TCTGAATCTT 
    GTCTGATACT TGATTCTAGC AAAGTTCCTT TCAAATCTGC TCGTTGACCA 
    GATCCTGTCA CTGTTCTTAC TATTGCCTCT CCTACTTCTT TTGGCCCTCC 
    AAACGCTTCG ATTCTATATC GTAAACAATA AACACTTTCA TAAAACAGAT 
    TCCGCTTCTT GAAATAAAAT GACAATTGCT CGTCAAGAAA ACATTGATGC 
    TTATTGGCAA AAGAAAAAAA AAAANNTNGN NNCNNATCNA TNNNGGNNNN 
    TTTNNNATNT NAANAATCNT ANCAAATNGG GGGTNNGCCC NANCTTNNGG 
    NATAAATNCA ANGNAGNAAA AAAAATCNNG TCCTTNCNTN GAAANNTNTG 
    GTTNNNNTTA AAANNNGTCC NAAANGTANN AAANAATNTN NAAAATNANA 
    ACTTNNAAAC NANTNGTTAA ACCNCTAAAA NAANCNATNT AGTCTTANAA 
    TTTTTTNTNA TNAANAATNA AATTTGTTNG CAAAATNTNN NAANCCNTTT 
    NCNTTANNNN TTNCCNNTNN CCANAAAANA ANAAAAGGTT TTTNCTTTAA 
    AAAAGAAG

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1561451 [Map]; Strand: c
      • AT3G05410.2 - [+] show detail - Photosystem II reaction center PsbP family protein
        Distance: 0; Region: exon3 (CDS)
      • AT3G05415.1 - [+] show detail - transposable element gene
        Distance: -863; Region: promoter
      • AT3G05420.1 - [+] show detail - acyl-CoA binding protein 4
        Distance: -327; Region: promoter
      • AT3G05420.2 - [+] show detail - acyl-CoA binding protein 4
        Distance: -327; Region: promoter
    Flanking Genome Sequence: 11-3483-1 - 3-prime edge 
    GTCAGAGGTG AAATCGGAAA TTTACACTAC TGCGAAATCG TTCAATATAA 
    TTTCTTGAAT GTAAAGGATC GGAAAACAAA TTGTAAAAAC CCAAAAAGAA 
    ACAAGATACT TCAAAGCAAA GCT

AT3G05410.2

Model type
Protein coding
Short Description
Photosystem II reaction center PsbP family protein
Computational Description
Photosystem II reaction center PsbP family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: oxygen evolving complex, extrinsic to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); BEST Arabidopsis thaliana protein match is: PsbP-like protein 1 (TAIR:AT3G55330.1); Has 355 Blast hits to 355 proteins in 83 species: Archae - 0; Bacteria - 114; Metazoa - 0; Fungi - 0; Plants - 146; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G05415.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 9.0e-48 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR

AT3G05420.1

Model type
Protein coding
Short Description
acyl-CoA binding protein 4
Curator Summary
Acyl-CoA binding protein with high affinity for oleoyl-CoA. Expressed in all plant organs. Involved in fatty acid transport.
Computational Description
acyl-CoA binding protein 4 (ACBP4); FUNCTIONS IN: acyl-CoA binding; INVOLVED IN: lipid transport; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 2 (InterPro:IPR011498), Acyl-CoA-binding protein, ACBP (InterPro:IPR000582), Kelch-type beta propeller (InterPro:IPR015915), FERM/acyl-CoA-binding protein, 3-helical bundle (InterPro:IPR014352); BEST Arabidopsis thaliana protein match is: acyl-CoA binding protein 5 (TAIR:AT5G27630.1); Has 12542 Blast hits to 6987 proteins in 469 species: Archae - 21; Bacteria - 614; Metazoa - 5387; Fungi - 1265; Plants - 2730; Viruses - 3; Other Eukaryotes - 2522 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G05420.2

Model type
Protein coding
Short Description
acyl-CoA binding protein 4
Curator Summary
Acyl-CoA binding protein with high affinity for oleoyl-CoA. Expressed in all plant organs. Involved in fatty acid transport.
Computational Description
acyl-CoA binding protein 4 (ACBP4); FUNCTIONS IN: acyl-CoA binding; INVOLVED IN: lipid transport; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 2 (InterPro:IPR011498), Acyl-CoA-binding protein, ACBP (InterPro:IPR000582), Kelch-type beta propeller (InterPro:IPR015915), FERM/acyl-CoA-binding protein, 3-helical bundle (InterPro:IPR014352); BEST Arabidopsis thaliana protein match is: acyl-CoA binding protein 5 (TAIR:AT5G27630.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR