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11-3559-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 554968 [Map]; Strand: c
      • AT1G02610.1 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 11-3559-1 - 3-prime edge 
    ATTCTAAATA CATTTATAGA AAGTATACAA GCTGGTTAAA CCGATGTTTA 
    CTGAATTAAT ATGTCAAGTA AACCAATATA AAAATCGACC CCAATAAAGA 
    AAACCAACCA TAACCGAACC GAAACTCAAA TAAGTTAGTG AAAAACTTCA 
    TTATATTGGA GACATTTTTC AATTGAAGAT ACATACATTT TTCTAATACA 
    TTTGCTCCTA ACTCTTTTTT TTTTTNAGNC NGTTNGGGGC CCCNNAANGN 
    NAGGGNNNAA NCCNGTTCCC NTTTTNGTCC CNANCTNTTT TNGNAACCCN 
    TTNANGGTTT NNATTCCCCA ANTAACCAAN TAAACCNCGA AANTTNNATT 
    TCNNNANCNG GGGGGCTTGG GCNNNTNGNT TNCAANNTTT NNCAAAAATC 
    AAANNTTTTC CNTTTTNTAG TTNNNCCAAA AAANTTNGGG NCCCAAGGGA 
    AAANGTTTTN GNANCNCNTT TNGTTGGTTT TTNAAAAAAC CNNNTTAACC 
    TTAAAAAAAN CAAAAAAAAA NNNTTNCCNT AATTCNAAAC CCATTNAAAA 
    TTTTGGGNAA AANGNAAACN ANTTTTTNTT NTACCTTCAA AAAGCCAAAC 
    CCCTTTAAAA AAAAAAAAGG NAAGNNTTNA NAAATTTTGG GNNANCCTAA 
    AANNCAACCC NGGNANAAAT TTNCCAAATT GGGGGTTCCT TTTNTTNCAC 
    CCNCNGGGGN NGCAANNTTT GGGGCGAANA AAAANCAANA AA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 554852 [Map]; Strand: c
      • AT1G02610.1 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 11-3559-1 - 5-prime edge 
    TTTAGAATNA ACACTATAAT GGTGACAAAA AAAAGTGTAA GTAAATTNTT 
    GTAGTATTGC AGGAGTATAA ACCTGGATAC ACCACAACTT CAAAACCATC 
    TCGATTTATT GAAACAGCAG TCACAATCAG GTAATGAATT TTCTTTAAAA 
    ACAAAAATTT CAGGTTTAGT TTAAACTTTG AAGATTTAGA ATGAAAAATA 
    GATTTTGAAA ACATAGTCCA GCTTATTGAA TGATTCCTCT TCCTTTTCCC 
    CAGTTTTTAT AATAAACAAT AATCCAAAAC TAATGAAAAT AATAATTTAA 
    TTTATGAACA GAGATAATTT ACACATAACG AGAAGAGAAA ATGGAAGAAG 
    AAGAAGAAAT AGAAGATTAG TGAATAGAGA AGAATCAGAT TTTCAAGAAT 
    GCAACTCTGG TGTTGATAGA GGCGCCTCTT GTTGTANATA CTTGGCTCTC 
    ATTGTAAGTT CTAAATCCAT CCCCCTTTTA TTTAAAATGT TTTACGTAAT 
    ATATTTATTA TATTCGTTTG AGATTAGAAA ACATAATGGA TGATATATAT 
    AGACATTATA AAAATTAGTT AAAATTAAAT GGTGGGTGAG GAAACGAGAA 
    ACCTTGGTTT AGCAAGGTCC AAATCANAAA TGGTGGCAAC CACTTCTATA 
    GAATCGACAT TTAAGGTTCG CATGATTGGT AACCATAAAT AATAATATGT 
    CCACTTGATT ATCAATCGTT AAG

AT1G02610.1

Model type
Protein coding
Short Description
RING/FYVE/PHD zinc finger superfamily protein
Computational Description
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT4G02075.1); Has 1637 Blast hits to 1605 proteins in 173 species: Archae - 0; Bacteria - 0; Metazoa - 761; Fungi - 107; Plants - 616; Viruses - 18; Other Eukaryotes - 135 (source: NCBI BLink).
Link
InterPro Scan - TAIR