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Mutant Lines
11-3884-1

11-3884-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 1036639 [Map]; Strand: c
- AT1G04010.1 - [+] show detail - phospholipid sterol acyl transferase 1
  Distance: -402; Region: promoter
- AT1G04020.1 - [+] show detail - breast cancer associated RING 1
  Distance: 0; Region: exon1 (CDS)
- AT1G04020.2 - [+] show detail - breast cancer associated RING 1
  Distance: 0; Region: exon1 (CDS)

GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCCCT CATTCATTAG CATGTTAGTA AATTCCGCCA 
TTGGTGATGT ACAAAACCCA GATCTAAATG ACGAAAGCTC TTGAAACCGA 
GAAGAGAAGG AGAAGATGCA CTTCCTTGCT TCGCCTCCGT GCGATTGGTA 
TTTACNTTGA GAATTTAGAG ACACGTGCAC GATAGATATC AAATGGCGGG 
AAGATAGGCG GGGATTTTAT GATTTGATTA AGCGGGAGAA AATGTGAATA 
AACGCCCGCT TGTTTGTTAC GAAAATTTTG AAATTATTCA ACTTTCAATT 
TCAAAGGCCC AATTAAAAGC CTATTTGTTT GTTACGACGT GATAGAGAGT 
AGTAACCTTC TCGATGACTT CGAAGGTTCT TGTAAGGGTA TATTTGGAAA 
GTTAAGACGC TTCCAAAAAC TTTTCAACTC TCACCTTCAA GGTCCCCAAC 
AACGCACACA CTCTCTCTCT CTCTCCTCTC TCTTACTTTT CCTCCTAAAC 
TCTGGCGATG AAAAGTAGTT AGAGACACCG AGCGATGGGA GCGAATT

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 1036685 [Map]; Strand: c
  - AT1G04010.1 - [+] show detail - phospholipid sterol acyl transferase 1
    Distance: -448; Region: promoter
  - AT1G04020.1 - [+] show detail - breast cancer associated RING 1
    Distance: 0; Region: exon1 (CDS)
  - AT1G04020.2 - [+] show detail - breast cancer associated RING 1
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 11-3884-1 - 3-prime edge
```
AATGAATCCA TGGGTTCTTC ATCTCCAGAA GCTCGAGCTC GAGCTCAAGT 
GCCCTCTATG GTTTGTTTCA CCCACAGCTT CCCTTTCCTT GATTATATTG 
TAGAGTAATC GAGTTTTTGT TTAGTGTTCT TGGAATCGTA ACAAGAGATT 
TACGTAATTT GCAGCTTAAA ATTGCTTAAT CGACCGGTGT TGCTTCCTTG 
CGACCACGTC TTCTGCGAGT GAGATTATCT AACTACTCTG TTATTCTTTA 
ACAATTCATT ACAAATTTGA ATT
```

AT1G04010.1

Model type: Protein coding
Short Description: phospholipid sterol acyl transferase 1
Computational Description: phospholipid sterol acyl transferase 1 (PSAT1); CONTAINS InterPro DOMAIN/s: Lecithin:cholesterol acyltransferase (InterPro:IPR003386); BEST Arabidopsis thaliana protein match is: phospholipid:diacylglycerol acyltransferase (TAIR:AT5G13640.1); Has 615 Blast hits to 606 proteins in 192 species: Archae - 0; Bacteria - 2; Metazoa - 241; Fungi - 118; Plants - 150; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G04020.1

Model type: Protein coding
Short Description: breast cancer associated RING 1
Curator Summary: Encodes a protein containing two tandem BRCA1 C-Terminal (BRCT) domains, which function in phosphorylation-dependent protein
Computational Description: breast cancer associated RING 1 (BARD1); FUNCTIONS IN: transcription coactivator activity, DNA binding; INVOLVED IN: DNA repair, regulation of meristem structural organization, leaf development; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: breast cancer susceptibility1 (TAIR:AT4G21070.1); Has 5889 Blast hits to 5527 proteins in 313 species: Archae - 0; Bacteria - 10; Metazoa - 4435; Fungi - 374; Plants - 570; Viruses - 11; Other Eukaryotes - 489 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G04020.2

Model type: Protein coding
Short Description: breast cancer associated RING 1
Curator Summary: Encodes a protein containing two tandem BRCA1 C-Terminal (BRCT) domains, which function in phosphorylation-dependent protein
Computational Description: breast cancer associated RING 1 (BARD1); FUNCTIONS IN: transcription coactivator activity, DNA binding; INVOLVED IN: DNA repair, regulation of meristem structural organization, leaf development; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: breast cancer susceptibility1 (TAIR:AT4G21070.1); Has 6045 Blast hits to 5706 proteins in 320 species: Archae - 0; Bacteria - 47; Metazoa - 4577; Fungi - 362; Plants - 542; Viruses - 11; Other Eukaryotes - 506 (source: NCBI BLink).
Link: InterPro Scan - TAIR