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11-3887-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19929565 [Map]; Strand: c
      • AT5G49152.1 - [+] show detail - other RNA
        Distance: 188; Region: intergenic
      • AT5G49160.1 - [+] show detail - methyltransferase 1
        Distance: -2665; Region: intergenic
    Flanking Genome Sequence: 11-3887-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTC TTTAGATTCA CAAAAACTAA ATCAAGATAT 
    ACAGTTAGTG CTTTTTTTTG TCTATTTGTG TTCTGTTTAA TGCAGATATT 
    TGTGTTCTGT TTCTATGTTT TGTATTTGTA GTTTCAAGTC CAAACTCATG 
    TCTTTTTATA AATCTAATCG GATCATTAAT CAATTTAATC TTGGTAGCTA 
    AACCAAAAAG GTAATTATAG AATCATTGAG CATTTACAAC AGAAGCATGA 
    CCAAAAAACA TTCTGATGGC TCANATTTAT CAACTTCGAG CCTTATCTAG 
    CTGGAACGGA AAAATGTTAA TATCTGGAGA CTACTGCTTA TTCTGGTTGC 
    CGGAAGTTTC ACCTATGTGT CTTTACCAAC AAACAAATAC ACAGAACAGA 
    TTACATTTCA ACAAGCGATA CTATTTTATA CAATTAAACC ATTTCCCCCA 
    AAATATACCT CTGCTGCGGA TGGCGATTCC ANATACTCTC AGGTAGACAA 
    CCAGTGATTG TTGTTGTTGA AAGATTTCTG TTTAACAATT CGGCATTGTC 
    CTGCTCCANA AGAGAGAATA ACCTTTTTAT GCTTGAATAT AAATGGCTAT 
    AGGAAAATAC AACAAGAGAG ATGTGTTTTT AGTTACCGTT GGTTTCTGCA 
    AATTCTTGNG TNGGATTCTT TTCTCGNGTA CTAGTANAAA TGCGCATTTN 
    CAAGTGAANA ACAGAAGCAA AGTANCTAGA GAAANAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19929581 [Map]; Strand: c
      • AT5G49152.1 - [+] show detail - other RNA
        Distance: 204; Region: intergenic
      • AT5G49160.1 - [+] show detail - methyltransferase 1
        Distance: -2649; Region: intergenic
    Flanking Genome Sequence: 11-3887-1 - 3-prime edge 
    TNNNAAANCG GNAGAGGTAT TTTANCGACC GTTACCGACC GTTTTCATCC 
    AATCTACAAC ACAGACAGAA AATTTCACTT AACCTAATCA CTTTGAACCA 
    TCATCTAAGT TGGTTAAGCT

AT5G49152.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT5G49150
Link
InterPro Scan - TAIR

AT5G49160.1

Model type
Protein coding
Short Description
methyltransferase 1
Curator Summary
Encodes a cytosine methyltransferase MET1. Required for silencing of FWA paternal allele in endosperm. Two lines with RNAi constructs directed against DMT1 have reduced agrobacterium-mediated tumor formation.
Computational Description
methyltransferase 1 (MET1); FUNCTIONS IN: methyltransferase activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA (cytosine-5)-methyltransferase 1 (InterPro:IPR017198), DNA methylase, C-5 cytosine-specific (InterPro:IPR001525), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), DNA methylase, C-5 cytosine-specific, active site (InterPro:IPR018117); BEST Arabidopsis thaliana protein match is: DNA (cytosine-5-)-methyltransferase family protein (TAIR:AT4G08990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR