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11-3950-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1172203 [Map]; Strand: w
      • AT1G04360.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -3325; Region: intergenic
      • AT1G04370.1 - [+] show detail - Ethylene-responsive element binding factor 14
        Distance: -2974; Region: intergenic
    Flanking Genome Sequence: 11-3950-1 - 5-prime edge 
    GTTAGAAGCT TCATCTATAT GTTAGTTAGG GTTCTTGTTC TGAAATAAAC 
    CTTTTATTAT AGATTCTATG TTATTCAATT GGTAGGTTCA TGCACGAAGA 
    CATAAAAAGA CTTTAGTTCT AGCTATATGT TGTCCCCAAC CTCGACCAGG 
    GGTTGAAATC GTCGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1172087 [Map]; Strand: w
      • AT1G04360.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -3209; Region: intergenic
      • AT1G04370.1 - [+] show detail - Ethylene-responsive element binding factor 14
        Distance: -3090; Region: intergenic
    Flanking Genome Sequence: 11-3950-1 - 3-prime edge 
    CTTCTAACTA AAGGTTATAG AATATCAAGG ATTTATGGGT TAATTTATTT 
    CTTTT

AT1G04360.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G43420.1); Has 9268 Blast hits to 9239 proteins in 300 species: Archae - 0; Bacteria - 0; Metazoa - 2276; Fungi - 656; Plants - 4907; Viruses - 85; Other Eukaryotes - 1344 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G04370.1

Model type
Protein coding
Short Description
Ethylene-responsive element binding factor 14
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.
Computational Description
Ethylene-responsive element binding factor 14 (ERF14); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G43410.1); Has 6105 Blast hits to 5744 proteins in 253 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6091; Viruses - 2; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR