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11-3966-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 221839 [Map]; Strand: c
      • AT4G00490.1 - [+] show detail - beta-amylase 2
        Distance: -481; Region: promoter
    Flanking Genome Sequence: 11-3966-1 - 5-prime edge 
    GTAGTGGCAA ATGTTGTATG TCAGATGTGT CGCAGTCTGT AATCAATGCG 
    CTACGTCTCT CTGTCTTAAC AAAATCATTG AAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 221955 [Map]; Strand: c
      • AT4G00490.1 - [+] show detail - beta-amylase 2
        Distance: -365; Region: promoter
    Flanking Genome Sequence: 11-3966-1 - 3-prime edge 
    GCCACTACAA TGCACGACTG TCTTCGGATT AATACATTAA TGTTACATCG 
    TTAGTATCAA TCTTACAGAT TATAAATAGC TTAGCCGATT GTTTAAGATA 
    GTATTATTCT AAATTCATAT ACACTCGTGC AAGTACAACA ACACACTAAA 
    GTTATTAAAT AATAAACACA TTTGATGTAG ATAAACTACT TTTTTTAGTG 
    ACGTGACTTT ACAGGCCCAA TAATATATTC TGAAAAGCCC ATAGTAATAT 
    TCACAAAAGC CCCTTGATAA AGTTGCAACG CGCGTACTTA TCTGACGTGT 
    CAGGTCACGC CACGTGGATT AGAAAAAAGT GGTAAAAGAC AAAACCCTTT 
    TGTACTCAAC GGATCTGAGT GAATCCTGAA AACTTTTTTA GGATTTCAAA 
    ATTGATTTGA ACCAACCAAT GATTCTTGGA TC

AT4G00490.1

Model type
Protein coding
Short Description
beta-amylase 2
Curator Summary
Encodes a chloroplast beta-amylase. The enzyme activity is very weak compared to BAM1 and BAM3. Mutant of BAM2 has no visible phenotype.
Computational Description
beta-amylase 2 (BAM2); FUNCTIONS IN: beta-amylase activity; INVOLVED IN: carbohydrate metabolic process, polysaccharide catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14, conserved site (InterPro:IPR018238), Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 14B, plant (InterPro:IPR001371), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-amylase 7 (TAIR:AT2G45880.1); Has 836 Blast hits to 835 proteins in 165 species: Archae - 0; Bacteria - 84; Metazoa - 0; Fungi - 0; Plants - 686; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).
Link
InterPro Scan - TAIR