1. Home
  2. Mutant Lines
  3. 11-3971-1

11-3971-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21762563 [Map]; Strand: w
      • AT3G58850.1 - [+] show detail - phy rapidly regulated 2
        Distance: -2621; Region: intergenic
      • AT3G58860.1 - [+] show detail - F-box/RNI-like superfamily protein
        Distance: 1179; Region: intergenic
    Flanking Genome Sequence: 11-3971-1 - 3-prime edge 
    TTTCCATCGG AGCTTATAAG ATGTTTTGAT CGTGGTGTGG GTTTAAAAAT 
    TCAGAAATAA TATGAACATA TGATTCTATT CATGCTAGAA GAAAAAAAAA 
    AAAANNGGGT TTNCCNNNCA TNNTTTNNNC CNANGGGGNN CCCCCCCCNG 
    GNCCGNANCC CCCCCNNCCC CTNNAAAAA

AT3G58850.1

Model type
Protein coding
Short Description
phy rapidly regulated 2
Curator Summary
Encodes PHYTOCHROME RAPIDLY REGULATED2 (PAR2), an atypical basic helix-loop-helix (bHLP) protein. Closely related to PAR1 (At2g42870). Up regulated after simulated shade perception. Acts in the nucleus to control plant development and as a negative regulator of shade avoidance response. Functions as transcriptional repressor of auxin-responsive genes SAUR15 (AT4G38850) and SAUR68 (AT1G29510).
Computational Description
PHY RAPIDLY REGULATED 2 (PAR2); BEST Arabidopsis thaliana protein match is: phy rapidly regulated 1 (TAIR:AT2G42870.1); Has 77 Blast hits to 77 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G58860.1

Model type
Protein coding
Short Description
F-box/RNI-like superfamily protein
Computational Description
F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT3G58900.4); Has 2117 Blast hits to 2070 proteins in 27 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR