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11-4195-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26125 [Map]; Strand: w
      • AT1G01040.1 - [+] show detail - dicer-like 1
        Distance: 0; Region: exon7 (CDS)
      • AT1G01040.2 - [+] show detail - dicer-like 1
        Distance: 0; Region: exon7 (CDS)
    Flanking Genome Sequence: 11-4195-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGNACGCT 
    TACATTTATA CNGTGTGCCA NCATGATNGG ACACNAGTAA CAGCCGGGAG 
    ATGAAATCAT CTCANACTGC AGGATACAAC TCNTCCAAAT TCCGAGATGG 
    GCATGTATGA TTTTNTTTGN CTTTCATTNA GACATATNNN TTTTTTATNN 
    ANTACANNAA ANGTNNTGNT ATTNCCTNTT NCNACNGNAN AAGGGAACNC 
    TNTAAATNNC CNNANACNNT GNGAAGGANG GACTCNATAT CCNGCNAGGA 
    NCCGGTTNTN TGCCTNNNAN CCCNNNCANA GACGGGGCTN GGAATACNGA 
    GCAGCCTTCN NGGCGGGNNN AAAAANCNNG GNNNANACTN CNTNCNCAGG 
    GTNGANAGGA NCATAAAAAG GNTNCNATGC CNGGANCCNT NAACCACGGT 
    GCCCCAAAAA AAAAATTTGG AAAANAAAAG GGGTAANNCC CTNANTTAAN 
    AAANNAAACC CNTGAAANAA AACNNATTNC CCNATTGNAN CCNAAATTAC 
    CANCCCGGGC CNNNNACCNC CCCNGCCCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 535814 [Map]; Strand: w
      • AT1G02540.1 - [+] show detail - unknown protein; Has 3327 Blast hits to 2216 proteins in 265 species: Archae ...
        Distance: -115; Region: promoter
      • AT1G02550.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily protein
        Distance: -669; Region: promoter
    Flanking Genome Sequence: 11-4195-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGCTTCTAAT GCTAAGTTTT AGGAAAATTT TAGGAAAAAA ATAAAACTAA 
    GTTTATCAAA ACAAAAAAAA ATAATAAAAA AAAAAANNGN TAAANGGGNA 
    AANNNCCGNC CCTNTNGGNN NTANCNTTTT TTTTTTNTTT TTNNANGGGN 
    TTTNCCGGGG GTTNAAAANC NTTTNNTTCC ANTTNNATTT GGNNTNNTTN 
    AAGGGGNCCN CCCCCCNANN TNGGGTTNNA ANTTTNGGAA ANCNNTNACC 
    NNGGGNAANC CCCAAANCCC CCNNTTTTTT NCCNTTNNCC NNAAACNGGG 
    GGGNCCNTNN CCCCGGNAAA AAAANNCCNG NCNGGGNGGG TTTTNNAAAA 
    ANNTTNAACT TTTNNAAAAN NANCCCNGGG TTTTTNCNNC CCTTAANNAN 
    NANTTTTTTN ANNAAAANGG NGGGNTNNNN NTTTTTAAAA NGNNNCCCNA 
    ANNNNGGNAA ANCCCNTTTC CTTTNGGNCC CNGNNCCNAA NGNCCTTTCN 
    GGGGGNCNTN GNNNAAAANC CGCNAAAAAA ANGNNANTTT TNGNNGGNNN 
    NAGGGTTTNG GNNNNCAAAN NAAACNTTTT TNCCCTNNGG GTTTTAAANG 
    NANTNCTTNG GGGANGGCCC CCCGGGTGNG TTTNAACCGG ATTTTTGCCT 
    TTGGGGCCCA AACCCACCCC AATTTNAAAA ANTTTNTTTN TTTTTTCCCC 
    NGGGNCCNAA AAAAAAAATN AAAAANCCGG CCCCCCCCNN AA

AT1G01040.1

Model type
Protein coding
Short Description
dicer-like 1
Curator Summary
Encodes a Dicer homolog. Dicer is a RNA helicase involved in microRNA processing. Mutations in this locus can result in embryo lethality. Embryo shape at seed maturity is globular-elongate. Other mutants convert the floral meristems to an indeterminate state, others yet show defects in ovule development. mRNA is expressed in all shoot tissues. DCL1 is able to produce miRNAs and siRNAs.
Computational Description
dicer-like 1 (DCL1); CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), Double-stranded RNA-binding (InterPro:IPR001159), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Ribonuclease III (InterPro:IPR000999), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Dicer double-stranded RNA-binding fold (InterPro:IPR005034); BEST Arabidopsis thaliana protein match is: dicer-like 3 (TAIR:AT3G43920.2); Has 21958 Blast hits to 17420 proteins in 2982 species: Archae - 328; Bacteria - 11461; Metazoa - 3615; Fungi - 1668; Plants - 1373; Viruses - 45; Other Eukaryotes - 3468 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01040.2

Model type
Protein coding
Short Description
dicer-like 1
Curator Summary
Encodes a Dicer homolog. Dicer is a RNA helicase involved in microRNA processing. Mutations in this locus can result in embryo lethality. Embryo shape at seed maturity is globular-elongate. Other mutants convert the floral meristems to an indeterminate state, others yet show defects in ovule development. mRNA is expressed in all shoot tissues. DCL1 is able to produce miRNAs and siRNAs.
Computational Description
dicer-like 1 (DCL1); CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), Double-stranded RNA-binding (InterPro:IPR001159), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Ribonuclease III (InterPro:IPR000999), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Dicer double-stranded RNA-binding fold (InterPro:IPR005034), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: dicer-like 3 (TAIR:AT3G43920.1).
Link
InterPro Scan - TAIR

AT1G02540.1

Model type
Protein coding
Computational Description
unknown protein; Has 3327 Blast hits to 2216 proteins in 265 species: Archae - 18; Bacteria - 202; Metazoa - 802; Fungi - 283; Plants - 84; Viruses - 187; Other Eukaryotes - 1751 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G02550.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily protein
Computational Description
Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT2G47340.1); Has 183 Blast hits to 176 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 182; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR