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11-4302-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28343699 [Map]; Strand: w
      • AT1G75500.1 - [+] show detail - Walls Are Thin 1
        Distance: -3458; Region: intergenic
      • AT1G75510.1 - [+] show detail - Transcription initiation factor IIF, beta subunit
        Distance: 3356; Region: intergenic
    Flanking Genome Sequence: 11-4302-1 - 5-prime edge 
    CTTATAAAAG TGTTTAGTTA AAATACAAAT AAAAGGAATT AATTAGCATT 
    TTTGGTCTTT GTGACAGAAG ATAAACCCTT ATTTAGTTAA AAAAGGAAGA 
    AAACAAAACC CTTTTTAGGA TGAAAAAGAA GATCCCGATA TATAAAGGAT 
    GATATTCGAT CTAAGTCTAT CTCTCTCAAT CGGTAAAGGG TAAAGAAACG 
    GGTCGGGTAA GGACCCAGCA AGACAGTAAC GGATCGGGTA AGGACCCAAC 
    AAGATAGTAA CCGGTAACGA GCAGACGAAG AAGAAGAGGG AGACCAATCT 
    TAGTTGGAAT ATTTAATTGC CTTGTCTCCT TTTTCCTCAC TTTATTTCGT 
    TTCTTTATCA TTTTTGCTCG CCCACGAGCG AATCTTCTTG TCTCCGATCT 
    CTCTCTCTTC TCTTTTTCTC ACTCCACTTT TGAACTTTAC CACAAAAGAT 
    TTAGCTTTTA ACCTAAATTC CAAGATAAAA GAATGTAAAT TACTTTTAGA 
    GGTATTTGAG AAGATTAATG CATAAATTTA GAATCTTAAT ATGACCAAGT 
    TATATAAACT CGGCTCTTAT TCTTTCACTA ATTATCCGAT ACGCTAAATG 
    CTATCACTTA TTTACGACAA TACTTGGNGA TCANNCNTAA TCAACAAAGA 
    NAAANCGTTC CGACTGATTG TCTGAAAAAC NTANACNCGG GTCTGNAAAA 
    CTGGNACACA TTTAATG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28343583 [Map]; Strand: w
      • AT1G75500.1 - [+] show detail - Walls Are Thin 1
        Distance: -3342; Region: intergenic
      • AT1G75510.1 - [+] show detail - Transcription initiation factor IIF, beta subunit
        Distance: 3472; Region: intergenic
    Flanking Genome Sequence: 11-4302-1 - 3-prime edge 
    TTTATAAGCA CTACTGCACT AGTTCCGGAA ATTGGGCTAA TTAATAGTGA 
    AACTTTAGTC TTTACCATCA ATAATACGCC CTTCTTTTAT AACAATTGAT 
    GTTTAGTGAT CTTTCATATT CATTAAGGAA CAAACTAAAA ATATTTCATC 
    CTACCATCTA CTGATCTACA ATAAATTAAT TAGTGCCAGT GTTGTGAAAT 
    TTTGAATTAA ATTTGACACC TTAGTTAATT ATGAGTTCAG TGCTTGTTTC 
    GCATAGGTAA CAACGAATCA TCATTTGAGA ATGATATAAA ACAACCTAAA 
    TATATGCAAG TGTAAATCAT GAACCTACGT TATAGATCCT AATATAAACC 
    ATATATAATT AACAAACTAA TATGTGCTGG ATTTGGTATG TCCAGCTGGG 
    TATGTCTTCA TTTATCTCTC AAATTTACTG ATACTATAGC TAATAGCTAT 
    ATCTGAAAAG AGTAATTCCC AATTTCAACA TACAATAACA AGATATTCAT 
    CAATAAGATC ACTTTTACTA GTTATGAACA GTACCTGGAG AAACAATTGA 
    TATTTTTCAA TTATCTACCA TACACATCAT CGCGTAAATC AAACCCTCAA 
    ATTCTGAATG AATTAGAAGG AAAACTCATG CCAAGACCTC TGGCAAACTA 
    CGTATTTTTA TTATGATGAA ATAATCATTT ACAAGAATTG TAGACAGATT 
    TGGAAATCTC ANTNTA

AT1G75500.1

Model type
Protein coding
Short Description
Walls Are Thin 1
Curator Summary
An Arabidopsis thaliana homolog of Medicago truncatula NODULIN21 (MtN21). The gene encodes a plant-specific, predicted integral membrane protein and is a member of the Plant-Drug/Metabolite Exporter (P-DME) family (Transporter Classification number: TC 2.A.7.3).
Computational Description
Walls Are Thin 1 (WAT1); INVOLVED IN: positive regulation of auxin metabolic process, positive regulation of tryptophan metabolic process, secondary cell wall biogenesis, unidimensional cell growth; LOCATED IN: plant-type vacuole membrane, plasma membrane, membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT3G53210.1); Has 4164 Blast hits to 4147 proteins in 615 species: Archae - 25; Bacteria - 1869; Metazoa - 6; Fungi - 0; Plants - 1248; Viruses - 0; Other Eukaryotes - 1016 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G75510.1

Model type
Protein coding
Short Description
Transcription initiation factor IIF, beta subunit
Computational Description
Transcription initiation factor IIF, beta subunit; FUNCTIONS IN: RNA polymerase II transcription factor activity, general RNA polymerase II transcription factor activity, catalytic activity, ATP binding, ATP-dependent helicase activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter, transcription from RNA polymerase II promoter; LOCATED IN: mitochondrion, transcription factor TFIIF complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Transcription Factor IIF, Rap30/Rap74, interaction (InterPro:IPR011039), Transcription initiation factor IIF, beta subunit (InterPro:IPR003196), Transcription initiation factor IIF, beta subunit, subgroup (InterPro:IPR016640); BEST Arabidopsis thaliana protein match is: Transcription initiation factor IIF, beta subunit (TAIR:AT3G52270.1); Has 346 Blast hits to 346 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 128; Plants - 70; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).
Link
InterPro Scan - TAIR