Home
Mutant Lines
11-4417-1

11-4417-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 1236409 [Map]; Strand: c
- AT1G04530.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
  Distance: -375; Region: promoter
- AT1G04540.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
  Distance: -847; Region: promoter

CCCCGGTCTA GACTCAAAAA ACCTCAGTTC ATGTGGACCT TATTGTCCGC 
CCAAAAGAAA GGTCAAAACT CATGTGGATA TCCCTTCTTT CTTTATTTAA 
TCACGAGTCA CAAAACTTTT TGTTCCTTCC AAATCGAACC CAAACTAATT 
TTTTGAATAT GTAAGTACAC AAATACNTTA AACCGAAATT GAAATGTTGA 
TATACGTTAG AAAAATTGTA TGCTTAGTAT AAAACCGAGA CTAATTGATG 
ATTTCTTGAA CAAAAGAACA GATTAGTTTT TGCTTCGGAG TGATGGGTCA 
AATAGACAAA ACATAAAGTT AAGGAATAAT TTGTAAACAA TATGATACTA 
AAAGATCCTT TCCTGAGTTT TGCCGTTTCT CAGGAAATCT AACAGAACCC 
CACTTATCTT GTTTCTCTAA CTGGGTCGGT CACCTAAGAA CCTCAAAATC 
ATCTTCGTTT GGTCGTTGTC TTGGGGTCCT CCGAATCAAG AACCCACAAA 
TAACAATCGA GGAATCTGTG AACGACGACC CAATTGAACC TAAAGTTGAA 
GACTTTGGAC GGATTTAGAA AGAAAGACCC AAAAAGATGC TGAAAAGCGA 
GGCATCTCTC TCGATTTACT GCGACTCTGG AGATGGGTTC AAATCCGAAG 
ATCCGGGGAC TGGAATCGAG GANAATTTGG AGAGAACGGN TACNANNGGN 
GATGCTNT

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 1236479 [Map]; Strand: c
  - AT1G04530.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
    Distance: -445; Region: promoter
  - AT1G04540.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
    Distance: -777; Region: promoter
Flanking Genome Sequence: 11-4417-1 - 3-prime edge
```
ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
GGGGCAAGTC AATAATACAA AAAGAGGACA ACTTGTCAAA TCATTGGTCC 
ATTCAAATGA AAAGAAGCCC ATAATAAATG TGACAAGGAT GTGTAACATG 
GCCACAAAAT AATCAGTTTG GTTTCGTTCA TTTTGGACTA TGGGGTTGGT 
TTTGAAATTC CATTCCAGCA CATAGAATTT CAGAACACCA ATTACGAAAG 
GCTTTATCGT GTTAGAAGTT ATATATTTTG AGAAGAAAAA TAAAAGATAT 
TGTTATTATG AAGGATC
```

AT1G04530.1

Model type: Protein coding
Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description: Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G17940.1); Has 713 Blast hits to 362 proteins in 65 species: Archae - 10; Bacteria - 98; Metazoa - 37; Fungi - 8; Plants - 512; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G04540.1

Model type: Protein coding
Short Description: Calcium-dependent lipid-binding (CaLB domain) family protein
Computational Description: Calcium-dependent lipid-binding (CaLB domain) family protein; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT2G33320.1); Has 556 Blast hits to 454 proteins in 75 species: Archae - 0; Bacteria - 32; Metazoa - 92; Fungi - 46; Plants - 336; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).
Link: InterPro Scan - TAIR