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11-4560-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1177772 [Map]; Strand: c
      • AT1G04380.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-4560-1 - 5-prime edge 
    GCTATGATCG GATACTCGAA GCATGTGATG AGTTTAGGTG GCTTGCTCTT 
    TGAACTTCTC TCAGAAGCTC TTGGTTTGAA CTCTGATACT CTTAAGAGTA 
    TGGGTTGCAT GAAGGGTTTG CATATGATCT GCCATTATTA CCCTCCCTGT 
    CCACAACCTG ACCAAACCTT AGGCACAAGT AAGCATTCCG ACAACACTTT 
    TATCACTATT CTTCTTCAGG ACAACATCGG TGGTCTTCAA ATTCTTCATC 
    AAGACTGTTG GGTTGATGTC TCGCCTCTTC CCGGGGCACT TATCATCAAC 
    ATCGGAGATT TCTTGCAGGT AAGCTCACTG ATCCATAGTT GGACCTAAAA 
    GTATAAGATA ACATAAAACA GAGGTTTTAG TGCGTGATGC ATTGATTTAC 
    TTTCTCACTT AAGGTTTTCT TATTCGGGTT GTGCTGCACA ACTTGTGCAG 
    CTAATGACGA ACGACAAGTT CATAAGCGTT GATCATAGGG TGCTTACAAA 
    CAGAGTTGGA CCGAGGATTT CAATCGCATG CTTTTTCAGC TCGAGTATGA 
    ATCCAAATTC CACAGTTTAC GGACCAATCA AAGAGCTTCT CTCTGAANAA 
    ACCCTCCAAA ATACAGAGAC TTCACTATAC CAGAGTACTC AAAGGGATCA 
    TTGAGAAAGG TCTCGATGGA ACATCGCATT CTGTCACATT ACAGGATTTG 
    AGAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1177888 [Map]; Strand: c
      • AT1G04380.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 11-4560-1 - 3-prime edge 
    ATCATAGCAT CTCTGAGCCA ATGATGTTAG AATCAATAAT ATATCTTCAA 
    TATTTCCTAA GACTTCTCAA TGAAAACAAA ATTACCTGCA AGCCACAGGG 
    AGATCTTCAG GGTTTGAAGG ATCGGGATC

AT1G04380.1

Model type
Protein coding
Short Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator Summary
encodes a protein similar to a 2-oxoglutarate-dependent dioxygenase
Computational Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: 2-oxoglutarate-dependent dioxygenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G04350.1); Has 8121 Blast hits to 8082 proteins in 999 species: Archae - 0; Bacteria - 1115; Metazoa - 117; Fungi - 760; Plants - 4878; Viruses - 0; Other Eukaryotes - 1251 (source: NCBI BLink).
Link
InterPro Scan - TAIR