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11-4654-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29490375 [Map]; Strand: c
      • AT1G78380.1 - [+] show detail - glutathione S-transferase TAU 19
        Distance: -2469; Region: intergenic
      • AT1G78390.1 - [+] show detail - nine-cis-epoxycarotenoid dioxygenase 9
        Distance: 520; Region: intergenic
    Flanking Genome Sequence: 11-4654-1 - 5-prime edge
    ATGTGAATGA ACTGTGTAGA GCTAGAGAAG CTTCTTATAG AAGGAATTTG 
    ACCTTCGAAA ATGGAAACCC GAAAATATCT CATGTGATCT CTGTTTTGGG
    AATGAGGTCT ACNTTTAATC TTTCTGATCG TTCTTTGTCT TTTTTACAAT
    TATCAACAAC TTTTATTTAT CTGCTCGTTT TTCGTCTGTT CGTTTTTTGT
    TCTTCTTGCA ATAATTGGTA TTACAAATTA CGAAATTACC ACAATACGAA
    TTATTGTTTT TTTATTCTTC TTCTTTTAAA GTAAGAAATC CATATCCCTA
    TACTTATATT TCGAAATTAC ATTAAAAAAC TAACCTTGTA TTTTATAAAA
    TATTACTTAG GAATACCATT AGAAATAGAA TTTAAAGGTC CAAACTAATT
    CAGTTCATTA AAATAAACAA GTCAAAACTT TATTTATGCA ATTTAATTAT
    AAACCAAAAA GATGCATTTA TGGGTTTAAC TTGTTGACAG CTTATTTTAT
    TCATGAATTT ACGTTGAGGT TGTTGCGATT TCTACTTTAA GCAAACGGGA
    AACATCTCAC AGTTTTGACT TGTGATCTTT TATCCTACTC TTATTGGTTC
    TAAAGTGCAT ACACGTAAGC GTATACATAA GCACTCGCAT TTCACAGTAG
    CCAATCGATT GATTCTAATC TTGGAACATG TAATACACTT CATGGCCACT
    CT
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29490491 [Map]; Strand: c
      • AT1G78380.1 - [+] show detail - glutathione S-transferase TAU 19
        Distance: -2585; Region: intergenic
      • AT1G78390.1 - [+] show detail - nine-cis-epoxycarotenoid dioxygenase 9
        Distance: 404; Region: intergenic
    Flanking Genome Sequence: 11-4654-1 - 3-prime edge
    ATTCACATGC AGCTCACAGA GATATTTGGG GAAGCTTACA TAATATAGAA 
    AAGATATCAG CATAAACCTT CTAAGATAAT CAAGTTTAGT GTGTCGANCC
    AGCCCGNGNC NTCATCCACC NGNGCCCNNG ATTCGTCGA

AT1G78380.1

Model type
Protein coding
Short Description
glutathione S-transferase TAU 19
Curator Summary
Encodes a glutathione transferase that is a member of Tau GST gene family. Expression is induced by drought stress, oxidative stress, and high doses of auxin and cytokinin. naming convention according to Wagner et al. (2002) The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim.
Computational Description
glutathione S-transferase TAU 19 (GSTU19); FUNCTIONS IN: glutathione transferase activity, glutathione binding; INVOLVED IN: response to oxidative stress, response to cadmium ion, response to cyclopentenone, toxin catabolic process, cellular response to water deprivation; LOCATED IN: chloroplast, plasma membrane, chloroplast stroma, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase TAU 25 (TAIR:AT1G17180.1); Has 6888 Blast hits to 6873 proteins in 1203 species: Archae - 0; Bacteria - 3293; Metazoa - 563; Fungi - 167; Plants - 2052; Viruses - 0; Other Eukaryotes - 813 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G78390.1

Model type
Protein coding
Short Description
nine-cis-epoxycarotenoid dioxygenase 9
Curator Summary
Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene increases during the first 6h of imbibition.
Computational Description
nine-cis-epoxycarotenoid dioxygenase 9 (NCED9); CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: nine-cis-epoxycarotenoid dioxygenase 3 (TAIR:AT3G14440.1); Has 2892 Blast hits to 2853 proteins in 497 species: Archae - 16; Bacteria - 810; Metazoa - 240; Fungi - 201; Plants - 889; Viruses - 0; Other Eukaryotes - 736 (source: NCBI BLink).
Link
InterPro Scan - TAIR