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11-4705-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3769046 [Map]; Strand: c
      • AT1G11240.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 24...
        Distance: -752; Region: promoter
      • AT1G11250.1 - [+] show detail - syntaxin of plants 125
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-4705-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCC ACCAGGGACA TTACGGCTAT TAGCATTCGC 
    TTTCTCTAAG GCTTCGAGCT TCTGCTTGAT GATTTTAACC CTCTTAAGGA 
    CCATTGCTAC AGTCTCCATC CATCTTAGCT CGTAGCTCTT TAACCTTCTT 
    GGCATTGTGA ACCGTCTTGC ACTCCTCGTT TGAGTCTTGA AGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 6230909 [Map]; Strand: c
      • AT3G18180.1 - [+] show detail - Glycosyltransferase family 61 protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 11-4705-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    ATGAAACGCG TGAGAGAATG GACGGTGAAA TTAGTACAAA ACGCTAGTTT 
    ATCACGTTGC GTTAGGAATC ACAGCGTTCC GGCGATTCTC TTCTCTCTAG 
    GAGGTTTCTC GATGAACAAT TTCCACGATT TCACGGATAT CGTGATTCCT 
    CTGTACACAA CGGCGCGTAG ATTTAGCAGG TGAAGTTCAG TTCCTCGTGA 
    CGAACAAGAA TCTGTTGTGG ATCAACAAAT TTAAGGAATT AGTGAGAAAA 
    TTGTCGAATT ATGAAGTGAT TTACATTGAC GAAGATGACG AAAGTCACGA 
    AACGCATTGT TTCAGCAGAG TCATCGTCGG TCTCAATCGC CACCGTGATT 
    ATGACAAAGA GCTAACGATC GATCCTTCGA ATT

AT1G11240.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 Blast hits to 1934 proteins in 262 species: Archae - 0; Bacteria - 90; Metazoa - 921; Fungi - 378; Plants - 144; Viruses - 18; Other Eukaryotes - 933 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11250.1

Model type
Protein coding
Short Description
syntaxin of plants 125
Curator Summary
member of SYP12 Gene Family
Computational Description
syntaxin of plants 125 (SYP125); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: intracellular protein transport, cellular membrane fusion; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 124 (TAIR:AT1G61290.1); Has 2564 Blast hits to 2556 proteins in 299 species: Archae - 11; Bacteria - 67; Metazoa - 1171; Fungi - 457; Plants - 455; Viruses - 0; Other Eukaryotes - 403 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G18180.1

Model type
Protein coding
Short Description
Glycosyltransferase family 61 protein
Computational Description
Glycosyltransferase family 61 protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Glycosyltransferase AER61, uncharacterised (InterPro:IPR007657); BEST Arabidopsis thaliana protein match is: Glycosyltransferase family 61 protein (TAIR:AT3G18170.1); Has 763 Blast hits to 763 proteins in 164 species: Archae - 0; Bacteria - 23; Metazoa - 306; Fungi - 8; Plants - 399; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Link
InterPro Scan - TAIR