1. Home
  2. Mutant Lines
  3. 11-4798-1

11-4798-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30315023 [Map]; Strand: c
      • AT1G80650.1 - [+] show detail - RNAse THREE-like protein 1
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-4798-1 - 5-prime edge 
    GGTTTGGTGG TGGTGGTGTG TTCTTCATCT GGTTTAGGAG CAAGCGTCTT 
    CTCTAGTGAA ATGCTTCTTG TGCTGTTAGG ATCAATTTGA ATGTTAGAGA 
    AGGAAGAAAT GGCATTGTCT TCTTCTTCAA ACTTGAAGTC AGTCTTCTCT 
    TGGAATCTCT GCATTCCCAC ATTATGATGA TCTTGCGCCA TTGGTTTCTA 
    ACAATTGACA GAAGCAAAGT TGAGATATTT ATTACTATTA ACCCATGATA 
    TAGCCAAATC ACAGAAGAAG AATCATCTAC AAATAGAAAA CGCAGAGATT 
    GTTCTCTGTT TCAAACCCAA ATGATCAATT TTTTTGTTAG CGAGAAAGAA 
    NAGAATATGG TTGGAGTGAA TGAATATTTA CCATAGAGGG AATAGAAGAA 
    GGGTCGAGAG GAGGAATATC TTTGAGACTG ATGATGATCG ATCTTGACGG 
    TTTTTTGGTT ATCCGCTTCG TTTCCTGATC CTNNATCTTT CATATTACTA 
    CTCGTTGNCT AATTCCGANA GATATCTTTG GGAATCGAGA AATTGAAAAT 
    TTTATCGATC ATCGACAAAA CGGATAAGGT TCATTAATTA AATTCATTTC 
    CCCACAACAT NAAACTCTGT TNTAAAAAGN CAANGNNNNN ATNNATTTAT 
    ATGTNAAAGN TNNANNCCNG GCCNGNGNCN NNNCNNNNCN NANNAANGAG 
    NAAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30315110 [Map]; Strand: c
      • AT1G80650.1 - [+] show detail - RNAse THREE-like protein 1
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 11-4798-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTAAACCCAT ATCTAAAGGT 
    TCATTCATTT TTTCTTCACC TCTTTTGCTA ATTATGATGT AAACTTGTTC 
    GGAAACCAAC AGAGATTGCA ATTTTTGGTA TAGAAGATAG AATTTTGGTC 
    ATTTTGTTCT GAAATTTGTG TTCCAGATGA TGAATCTAAG ACTAGGAGAG 
    GCTCAGCTAA ATCGGTGTTA CACGAAATGT GTGCTTCCAA GCGTTGGAGA 
    CCTCCTGTTT ATGAATGCTG CAATGTTGAT GGACCTTGCC ATTTGAGATT 
    GTAAGTAAAC ATCTTCTAAC CTGCACTTGC TTTTATTTTT TGAGTCGCAA 
    TCTTTTTTGC ATCAACTTGG TTTTTTGGTT CAGATTTACA TACAAAGTTA 
    TGGTTGAGAT TAGAGATTCT TCAGGGAAAA CTGTTTTGGA GTGTTTTGGG 
    GATC

AT1G80650.1

Model type
Protein coding
Short Description
RNAse THREE-like protein 1
Computational Description
RNAse THREE-like protein 1 (RTL1); FUNCTIONS IN: double-stranded RNA binding, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: Double-stranded RNA-binding domain (DsRBD)-containing protein (TAIR:AT4G00420.1); Has 100 Blast hits to 100 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR