Home
Mutant Lines
11-4851-1

11-4851-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 9087083 [Map]; Strand: w
- AT1G26260.2 - [+] show detail - cryptochrome-interacting basic-helix-loop-helix 5
  Distance: 0; Region: intron1 (5UTR)
- AT1G26260.1 - [+] show detail - cryptochrome-interacting basic-helix-loop-helix 5
  Distance: -21; Region: promoter
- AT1G26260.3 - [+] show detail - cryptochrome-interacting basic-helix-loop-helix 5
  Distance: -131; Region: promoter

CTCAATGTTT TCTTTATCTT TTTCTCTGAA TTGAGGTTTG TTTGTACTTA 
AAGTATGCTC CTTTATCTAC CGTTGACTGA TTCTACTCTT TTATTCTCAA 
CTTTTCTCTG ATTTGCTCGT GTGTTTACNT TCAATTCCTC AGTTCTTCTG 
TAGAAAGTTG AGTTTCATGT GATCAAAATT GGGGCTTTAC TACTTTTAAG 
AGAATGAGTG ACAAAGACGA GTTTGCCGCA AAGAAGAAGG ATTTGGTCAA 
TACGCCAGTG GATTTGTATC CTCCGGAGAA TCCAATGTTG GGTCCTTCTC 
CGATGATGGA TTCATTCAGA GAAACTCTTT GGCATGATGG TGGTTTCAAT 
GTCCACACAG ATGCAGACAC TTCCTTTAGA GGTAATAATA ATATTGATAT 
ACCTCTTGAA ATGGGTTGGA ATATGGCTCA GTTCCCTGCA GATTCAGGAT 
TCATTGAGCG TGCTGCAAAG TTTTCTTTTT TTGGATGTGG TGAAATGATG 
ATGAACCAAC AACAATCATC TCTTGGAGTT CCAGATTCAA CTGGCTTGTT 
TCTTCAAGAT ACACAGATTC CTAGTGGATN

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 9087005 [Map]; Strand: w
  - AT1G26260.2 - [+] show detail - cryptochrome-interacting basic-helix-loop-helix 5
    Distance: 0; Region: intron1 (5UTR)
  - AT1G26260.1 - [+] show detail - cryptochrome-interacting basic-helix-loop-helix 5
    Distance: -99; Region: promoter
  - AT1G26260.3 - [+] show detail - cryptochrome-interacting basic-helix-loop-helix 5
    Distance: -209; Region: promoter
Flanking Genome Sequence: 11-4851-1 - 3-prime edge
```
ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAT 
GTTTTTCAAA AGAGAATCAT TATTCGTGGT AAAAAGTGTC AGAATTTCAG 
ATTCTGTGCC ACTTTCTCTC TACGATTTTT CAAATATCTT TTCCTTTCAA 
ATTTTCTTAC CAAAAAGCT
```

AT1G26260.1

Model type: Protein coding
Short Description: cryptochrome-interacting basic-helix-loop-helix 5
Curator Summary: Encodes CIB5 (cryptochrome-interacting basic-helix-loop-helix). Related to CIB1 (AT4G34530). CIB5 interacts with CRY2 and forms heterodimer with CIB1 in vitro. Regulates flowering time redundantly with CIB1.
Computational Description: cryptochrome-interacting basic-helix-loop-helix 5 (CIB5); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: positive regulation of flower development, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G68920.3); Has 2014 Blast hits to 2008 proteins in 104 species: Archae - 0; Bacteria - 3; Metazoa - 32; Fungi - 24; Plants - 1947; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G26260.2

Model type: Protein coding
Short Description: cryptochrome-interacting basic-helix-loop-helix 5
Curator Summary: Encodes CIB5 (cryptochrome-interacting basic-helix-loop-helix). Related to CIB1 (AT4G34530). CIB5 interacts with CRY2 and forms heterodimer with CIB1 in vitro. Regulates flowering time redundantly with CIB1.
Computational Description: cryptochrome-interacting basic-helix-loop-helix 5 (CIB5); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: positive regulation of flower development, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G68920.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G26260.3

Model type: Protein coding
Short Description: cryptochrome-interacting basic-helix-loop-helix 5
Curator Summary: Encodes CIB5 (cryptochrome-interacting basic-helix-loop-helix). Related to CIB1 (AT4G34530). CIB5 interacts with CRY2 and forms heterodimer with CIB1 in vitro. Regulates flowering time redundantly with CIB1.
Computational Description: cryptochrome-interacting basic-helix-loop-helix 5 (CIB5); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: positive regulation of flower development, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G68920.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR