1. Home
  2. Mutant Lines
  3. 11-4998-1

11-4998-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 5130 [Map]; Strand: c
      • AT3G01015.1 - [+] show detail - TPX2 (targeting protein for Xklp2) protein family
        Distance: -971; Region: promoter
      • AT3G01020.1 - [+] show detail - ISCU-like 2
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-4998-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT CTTTCTCTTT GCCGGAATCA AGGGCAGTTT 
    TGTTATATAT GCGATGTCGA GGGGACACGT GAACGGTGAG AATTATAACA 
    AATATTGGAA ATTAATCATC TCTTTTATTT TCCACNGATA ATCAGTAATC 
    AGAATCACNT AAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 5134 [Map]; Strand: c
      • AT3G01015.1 - [+] show detail - TPX2 (targeting protein for Xklp2) protein family
        Distance: -975; Region: promoter
      • AT3G01020.1 - [+] show detail - ISCU-like 2
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-4998-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAG 
    AGAGAATATG ATGATGCTAA GGCAAACGTC GAGAAAGGCT TACCTAGGGT 
    TACAGGCGTC TCCTCTAGGG TTAGGTCGTC GATTATACCA CGAGAATGTA 
    ATCGACCACT TTGAAAACCC TAGAAACGTT GGCTCCTTCA ACAGGAATGA 
    CCCTAACGTT GGCACGGGAT TGGTAGGAGC TCCTGCCTGC GGAGACCTCA 
    TGAGCCTCCA GATTAAGGTC GATGATTCAG GTCAGATCAT TGATACTCGA 
    TTCAAGACCT TTGGCTGTGG CTCCGCTATC GCCTCATCTT CCGTTGGTAT 
    GCCTTCGAAT CAGGGTTTTC AATTTTGATC GATTCGTTAA GAGGCTCATG 
    ATCAGAGTCA GGTAGATGTA GACAGGTTAT AATTTGTATA TTTGTTTGGT 
    TCAGCTTCTG AATGGATCAA GGGCAAAACC TTAGACGAAG TTATGACCAT 
    CAAGAACGCG TAAGTGCCTT TTAACCATCA AAATCATGTC TCTTAGATAT 
    ATCGTCAGGA TTGTTATCTC TAACTCTGTT CTAGTGCTTG GAATATCCCA 
    AATCTAGTGA TATGGTTAAC ATTTTGATGA ATGAGTCATT GTTTTGGGAT 
    TCTTAAATTT GCAGGGAAAT CGCTAAGCAT CTTAGGTTGC CACCGGTAAA 
    GCTACATTGC AGTATGCTTG CAGAGGACGC TATCAAGTCC GCGGTCAGAG 
    ACTACAAGGA GAAGCAA

AT3G01015.1

Model type
Protein coding
Short Description
TPX2 (targeting protein for Xklp2) protein family
Computational Description
TPX2 (targeting protein for Xklp2) protein family; CONTAINS InterPro DOMAIN/s: Xklp2 targeting protein (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: TPX2 (targeting protein for Xklp2) protein family (TAIR:AT5G15510.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01020.1

Model type
Protein coding
Short Description
ISCU-like 2
Curator Summary
Encodes a mitochondrial protein similar to E.coli IscU. In bacteria, IscU is a scaffold protein accepting sulfur and iron to build a transient Fe-S cluster,which is subsequently transferred to a target apoprotein.
Computational Description
ISCU-like 2 (ISU2); CONTAINS InterPro DOMAIN/s: NIF system FeS cluster assembly, NifU, N-terminal (InterPro:IPR002871), ISC system FeS cluster assembly, IscU scaffold (InterPro:IPR011339); BEST Arabidopsis thaliana protein match is: SufE/NifU family protein (TAIR:AT4G22220.1); Has 5480 Blast hits to 5480 proteins in 1991 species: Archae - 108; Bacteria - 3649; Metazoa - 148; Fungi - 153; Plants - 89; Viruses - 0; Other Eukaryotes - 1333 (source: NCBI BLink).
Link
InterPro Scan - TAIR