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11-4999-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1258654 [Map]; Strand: w
      • AT1G04590.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) su...
        Distance: 0; Region: exon9 (3UTR)
      • AT1G04590.2 - [+] show detail - BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) su...
        Distance: 0; Region: exon9 (3UTR)
    Flanking Genome Sequence: 11-4999-1 - 5-prime edge 
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTG CGACAAATCC CAAGGGATGT GAGCATTGTC 
    AACAATCCAT CGATTAAATA CATCCTTACA GTCCATGTTT CTCTTGCAGT 
    GATACTTTAT CGATTAAATA CTACAACTTA CGCTCCATGT TCGAATTGTT 
    TTTCAGTGGC AGCTTCTGAT TCTTGGTGAT TATCCAGATT TTCTTTTCGC 
    TCTTCTTGGA TTTCAGCTTT TGCTGCATCA ACTGCGCCTT CTGTGGTTGC 
    TTCTGGAATC CTCAGTTCTG AAATCACAAA TTAGACAGTT TAAAACTTAT 
    CCTGTTTTGC GCAAGAATCT ATAGCACATG AGTTCAATAT CAAACGGCTT 
    TAAAGATGGT TGAAGATATC AATGGCTAAA TCGCAATCAC CTACCTGGTT 
    TCTTCTTCTT CCTCGAAGAT CTACTTGGTT TATCATCCGA TGGTGTACCA 
    AGTAAAAGAT GGCTATACTT CGTCACTACC CGTTCTTTCT CATCAAGCAT 
    TCCCAAAAGC TCATAAGCAT CAGCCACGGT CTGCACAATG TGCTTGTCCG 
    GAGGCTTACG GTCATAACTC TCCAGATCCT TGAATAGCTT CATAACCCAC 
    ATAACAAAAC AAACACAAGT TTGAGGTCAC CACGAAATAA AGTAACTTAC 
    TAGTTCAGTT AAGTATCAAT GTGCAATGTT TTCTTATTTA GTTTTCGGNC 
    AGTGAAGACA AGGGGGAAAA GAAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1258599 [Map]; Strand: w
      • AT1G04590.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) su...
        Distance: 0; Region: exon9 (3UTR)
      • AT1G04590.2 - [+] show detail - BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) su...
        Distance: 0; Region: exon9 (3UTR)
    Flanking Genome Sequence: 11-4999-1 - 3-prime edge 
    ANTGGATGGA TATAGAGTTN AGGGTTTGAG TGCGGCACTA NTATTACTGA 
    GAAATAAGAT AACAAAATCA CATCTACATC TGAAGTTTTC GACACACCTC 
    AACATCCAAC GATCTGAACC AACTACCATC CAAACCAATA ACATCGTCTA 
    AAACCTACAA ACTGATTGAA TAAAAAGATA AGCTAGGGAA GGTATCATAG 
    TGGTTCGGTA CGGTTTGAAT TGGTTAGATG AGATTGGACC CCTACCGAAA 
    ATAGAGTCTT CGGTTACATT TGGTTTAATA ACAAGTTCAT TTGAAAGTTA 
    AGAAAATAAC TAGTATTCGA ATTTAGAGAT TGCGGGAGAT TGTATGTTCA 
    TTCGAAATAC AGTACAGAGA TGCTTCGATT CCAGATCTGC GTCCGGTCTC 
    TAATGGCCAT TCGATTCTCG ACCAAAGAGG GAATCTTTCG GGATGGGTTG 
    ATTTGTGGGA AGTGGGAACC AAACGGAATG GGAAGACGGA AGAGGAAAGG 
    TTTAGGAGAA ATCAATCAGA CCTCCAAGGC CAAAGTCACC TTCCGATTTA 
    GGTAAAGCT

AT1G04590.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G21190.1); Has 111 Blast hits to 111 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G04590.2

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18975.4); Has 111 Blast hits to 111 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR