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11-5010-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19021744 [Map]; Strand: w
      • AT2G46330.1 - [+] show detail - arabinogalactan protein 16
        Distance: -2489; Region: intergenic
      • AT2G46340.1 - [+] show detail - SPA (suppressor of phyA-105) protein family
        Distance: 429; Region: intergenic
    Flanking Genome Sequence: 11-5010-1 - 5-prime edge 
    GTGGCAGATG TGAAAGATGA CTTGCAAGAG ATGGCATAGC ACCAAAATCT 
    TAAAGATTTT GCTTCGAAGG AAGGATAATG TTTTGATTTT TAAAACGCAA 
    GACAAAGAGA GTCTCTCGCG AAAGCAGAGG GTTCAAATCT AAAGAGAAAT 
    GTTGGCTCAA AGGCCTAAAC CCACGCCACC AAGCAATCAA TTACATCTTC 
    CTATCCTAGT TTTACTCTTA AACATACAAT GTACCCATTA CATGTTGGAC 
    ATAGATACAA AGAACATGTC TAATTCATGA TTTCGAGATT TATAGTAATA 
    GATAATAGGA AAAAAATAAC CACATTTAAC CCATGTGCCC TTCATCAACG 
    ACATATTCTA CTTGTTTTCC TAGAGACTTG AAGTTGGTGG NCACACTNNT 
    AACATCNNAT GNGCNATTGT TATGAATTTC TTCTAAAACA ACACTGAATC 
    TAAAACCATA AATTGTGAAA TACGCAGACG AGAGGTAGTA GCCATGCGAT 
    GAAATGAATG GATGATATAT ATATTTTCTC TCTTATAGAG AATCTCCAAC 
    AACAATTACA TAACCGAGCT AACGATATAA CACACTTGTA CAAGTTATAT 
    ACCTCTCATC ATTACACGTT ATGCCGACCA AATATGAATC ATTTCTGAAG 
    AATCTGANAA GTTTATCTCA AATTATATCT CATATTTNTA GATTACAGGA 
    AG

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19021666 [Map]; Strand: w
      • AT2G46330.1 - [+] show detail - arabinogalactan protein 16
        Distance: -2411; Region: intergenic
      • AT2G46340.1 - [+] show detail - SPA (suppressor of phyA-105) protein family
        Distance: 507; Region: intergenic
    Flanking Genome Sequence: 11-5010-1 - 3-prime edge 
    GAAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TGCCAGGTAA 
    GTGTCTTTTG AGTATTCCAA TTCTAACAAG TCAGGACAAA CAAAAAACAA 
    AAAATTGGTT CTTCAATGGA AAATGAATCT AAATATTAAA TCATCAGTGA 
    CTATCAAATT TTGGCCCATT CTGTTCATGC CACAAAATAA TACTAGCAGT 
    TCTATCATCT TTGTTATGCC ATGCAATAAG AACATTTTCT GATATCTCTA 
    TACTAATATT GTAAAATGCT AAAGATGATT TGATTATTCT GATGAAATAT 
    TGGTAACTTT GACCAGTAGT TGACGAAACA TTGGTAATCG AATTGGAACC 
    AAAAGAGGCA AGTTGGGTTC ACAGGGCACA TGGTTGCTTC AAACAATCCC 
    ATTACTCCAT CCTTTTCATT GTCCCTCTAT TTTAGGCTCT TTGTGCTCAT 
    CTCTATTTTC TTTCTTTGAT CAAAATTATT AT

AT2G46330.1

Model type
Protein coding
Short Description
arabinogalactan protein 16
Curator Summary
Encodes arabinogalactan protein (AGP16).
Computational Description
arabinogalactan protein 16 (AGP16); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1070 (InterPro:IPR009424); BEST Arabidopsis thaliana protein match is: arabinogalactan protein 20 (TAIR:AT3G61640.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G46340.1

Model type
Protein coding
Short Description
SPA (suppressor of phyA-105) protein family
Curator Summary
Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA1 is a PHYA signaling intermediate, putative regulator of PHYA signaling pathway. Light responsive repressor of photomorphogenesis. Involved in regulating circadian rhythms and flowering time in plants. Under constant light, the abundance of SPA1 protein exhibited circadian regulation, whereas under constant darkness, SPA1 protein levels remained unchanged. In addition, the spa1-3 mutation slightly shortened circadian period of CCA1, TOC1/PRR1 and SPA1 transcript accumulation under constant light.
Computational Description
SUPPRESSOR OF PHYA-105 1 (SPA1); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), Protein kinase, catalytic domain (InterPro:IPR000719), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: SPA1-related 2 (TAIR:AT4G11110.1); Has 31438 Blast hits to 19748 proteins in 684 species: Archae - 32; Bacteria - 4770; Metazoa - 12431; Fungi - 6743; Plants - 3442; Viruses - 2; Other Eukaryotes - 4018 (source: NCBI BLink).
Link
InterPro Scan - TAIR