1. Home
  2. Mutant Lines
  3. 11-5024-1

11-5024-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8976824 [Map]; Strand: c
      • AT1G25550.1 - [+] show detail - myb-like transcription factor family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 11-5024-1 - 5-prime edge 
    GACATGACTC GATAGCTACA AGAATGATAT GTAAACAATT AAGAAACTGG 
    AAGCGATCGT GAAAACGAAG AATATATATA TCAAAAGAGG ATGTGTAATA 
    ACATTACCTT GGGTTACAAG TTCTAAACAT AAAGGGAGCT CACGTTGAAA 
    GACTTGAATC TTTTTTTGTT CTTCTTCTAG AGCTTCTACA TATTCGTGAC 
    ATCTCTTCAT TTTCTGGGTG TAATCCATGT CACCGCTCTT GAACATCATC 
    ATTATGAACA GATCTTAGAC TCGTTTTTGC TATGAGTTAC AGTTACGAAA 
    ACATAAATCT TGAGAGAGAC AGAGAAGAGT TTTGGATCTA AAATGAGAGA 
    GAAAGGATAA AACTTTGACG TTTTTAAGTT GGAAGTTTTA AAGGGCAGAG 
    AAAGAGGATT GGTGTCTAAT CGAGGTCGGG CCGTCGNNNA CCCAGNCCCN 
    AATCTTCTTG ATGTTTAGAT TTATTCGGAT TTTACTTGGG AAAGGGTAGA 
    ATGGTAAATA TAGGAATAGG CTGAGGTTTG TTTGATACAG GGAGAATATT 
    CGGGGATATG TGGATTCCTT CCTTTCCATA TTCTATCGAG CTGGCGATGA 
    TGTCANCATT CTCATGACGT TGACGTNGAN ATANAACNAC NAGNCATTNN 
    ANNATTACTA ACTNTTTNTT TTTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8850496 [Map]; Strand: w
      • AT1G25250.1 - [+] show detail - indeterminate(ID)-domain 16
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 11-5024-1 - 3-prime edge 
    GAAAACGGTA GAGGTATTTT ACAGGCTGTA ATGTAACAAC ATTACACACC 
    ATCCTATAAA ACATTCTTTG GTTTAGTTTA AGGATTCCAT ATTTCCAATT 
    ATAATCTTAC CTAGAAAGTT AAATTGTATA AATAAAATTT CAAAGAAAAA 
    AAAAANATTN GGANAACCCA ANANAANCTA ATCCTCAGTN TANANCCGAT 
    ANAATAGCTN GGGTTTTCCN CAAANCATCG ACTAAGTTAA CAAAATTTTT 
    TTTTNTANAT TTCCCCCCAN TTANANANGA NGATTTNTGA AAAANACCCN 
    GGNNAAANCC CGGCCCCAGN CCCNGGAGNG ACCGNGNGAN CCGCAGGTNT 
    NGAAANGGGC TTNGTAGNCA AATNGANCNG CNTANCCTTN GGNNCNTNTT 
    TCGCAANCCC NTNGNTNGGG GNCCCNGGGT TTNCGGGGGA NGGGCTTTTN 
    GNTTCCNNCC AAATNTCCAA AACCGNGGCC CGGGTCNNGG GGGAAACNTG 
    TGGGCTNAGG ACNCNCGTAA ACTNTTTTCC TNACTTCCTA ATCCTTNTNG 
    TNTNTTTTNA AAAGCTNCCA GCCNGGGCCG TNAACCACCC GNGCCCNTNN 
    A

AT1G25250.1

Model type
Protein coding
Short Description
indeterminate(ID)-domain 16
Computational Description
indeterminate(ID)-domain 16 (IDD16); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 14 (TAIR:AT1G68130.1); Has 32987 Blast hits to 15964 proteins in 303 species: Archae - 1; Bacteria - 31; Metazoa - 31048; Fungi - 164; Plants - 739; Viruses - 10; Other Eukaryotes - 994 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25550.1

Model type
Protein coding
Short Description
myb-like transcription factor family protein
Computational Description
myb-like transcription factor family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb-like transcription factor family protein (TAIR:AT1G68670.1); Has 1641 Blast hits to 1637 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1615; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Link
InterPro Scan - TAIR