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11-5037-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 18455 [Map]; Strand: c
      • AT1G01030.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: -4741; Region: intergenic
      • AT1G01040.1 - [+] show detail - dicer-like 1
        Distance: -4691; Region: intergenic
    Flanking Genome Sequence: 11-5037-1 - 5-prime edge 
    CAAAATACCC GTTTCTATTT TTTGAGTATT TTTAGGGCCT GAAACTTTTC 
    ATCCAAACTG ACCTAAACCC AACTGGACGC GACCCGAACC GAATATTTAG 
    AATTATTCTA TTAGGTAGTA AATCATATAC CCATTAATCC CAAACCCGAA 
    CGGGTTCTAC CCGAACTCGA ATGGGTTACT CATATGCCCA GCCCTATTCT 
    CTGATTTAAT TATCTAAAAA ATCCCAATAA AACATATGTT TTGGTGACTA 
    CTTTNTATTC AAAAAAATTT ACATCCTCTT CTGCCAAAAT CATTTCATAA 
    GACATCCCAA AACCCTTGGA ATAATGATTC CATGAATGAA GAATTACCAN 
    CCNGGGCCGN CAGACANGGC NTGNNCGGTN TTAAGTTTTT GATAGGTGTG 
    TATGTGAGAA GGTACATCCA TCGTGATGGT AATCTGCTTA TTTATAATTT 
    TAACTTGCAT TATACAGCAG GTAGTCTTAT ATTNTAGTTA AACTAAAAAC 
    TTTTATTGNA AAGTNGATTA TAAATATATG ATATTATNTT ATTNGATTTT 
    AAATGTATAG NAAACTGCGA GTTGNATATG TNNNGGNGAT ATTATNNATA 
    TNGGNNANNG TNAAAATTAT AAANCTNGNN TTTNGATNGG NAATNTAANA 
    GTTNCACANT GTGNTAACCA TNTTAGATTA ATATTGATTT AAAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 18571 [Map]; Strand: c
      • AT1G01030.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: -4857; Region: intergenic
      • AT1G01040.1 - [+] show detail - dicer-like 1
        Distance: -4575; Region: intergenic
    Flanking Genome Sequence: 11-5037-1 - 3-prime edge 
    GTATTTTGTA TGTAGATAGT GCGTCTCCAA ACAAAAAAAA ACTTTTAAAT 
    TTATTAAGTT TTAATAAATT TAATTATATT TGAATATATT TTACTAAAGT 
    TTGACAAATA TAACAAATAA TTTTGACAAA CATAACAAAC ATAACAAAGT 
    ATACAATTTA ATTTATACAA AATATTANTN CCCGTGTTGT ATAGCACGGA 
    TTATGATCTA GTTGGGTTTT ATTGTCAGAA GGACTACGTA TCAATATTGT 
    AACTATGAAT AACTTTTATG ACTGTTGAAT TAATTAATAA TTAAAAGAAC 
    TATTTACTTT GATAAATGTA AAAATGTTTA ATAAAATGTA ACTCATATAA 
    ATAAATTAAA TATATGACTA AAATTATAAT ATCAATACAA AAGTTATTGA 
    CATATAAAAG TAAATGAA

AT1G01030.1

Model type
Protein coding
Short Description
AP2/B3-like transcriptional factor family protein
Computational Description
NGATHA3 (NGA3); CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT4G01500.1); Has 1380 Blast hits to 1379 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1380; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01040.1

Model type
Protein coding
Short Description
dicer-like 1
Curator Summary
Encodes a Dicer homolog. Dicer is a RNA helicase involved in microRNA processing. Mutations in this locus can result in embryo lethality. Embryo shape at seed maturity is globular-elongate. Other mutants convert the floral meristems to an indeterminate state, others yet show defects in ovule development. mRNA is expressed in all shoot tissues. DCL1 is able to produce miRNAs and siRNAs.
Computational Description
dicer-like 1 (DCL1); CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), Double-stranded RNA-binding (InterPro:IPR001159), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Ribonuclease III (InterPro:IPR000999), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Dicer double-stranded RNA-binding fold (InterPro:IPR005034); BEST Arabidopsis thaliana protein match is: dicer-like 3 (TAIR:AT3G43920.2); Has 21958 Blast hits to 17420 proteins in 2982 species: Archae - 328; Bacteria - 11461; Metazoa - 3615; Fungi - 1668; Plants - 1373; Viruses - 45; Other Eukaryotes - 3468 (source: NCBI BLink).
Link
InterPro Scan - TAIR