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11-5051-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1515584 [Map]; Strand: c
      • AT1G05230.3 - [+] show detail - homeodomain GLABROUS 2
        Distance: 0; Region: intron4 (CDS)
      • AT1G05230.1 - [+] show detail - homeodomain GLABROUS 2
        Distance: 0; Region: intron4 (CDS)
      • AT1G05230.2 - [+] show detail - homeodomain GLABROUS 2
        Distance: 0; Region: intron5 (CDS)
      • AT1G05230.4 - [+] show detail - homeodomain GLABROUS 2
        Distance: 0; Region: intron6 (CDS)
    Flanking Genome Sequence: 11-5051-1 - 3-prime edge
    GTTATTATGT ACTACTACTC CTTACAGTTC CAAAAATATC GTTTTAGTAT 
    CTCAATTTAA TATCATAATT TTTTCTATTC TTCAATGAAA AAAAAATGTT
    TAAATTCTCT AATTTCAATA CAAATCTATA AAAGTTTTTA TTTTATGAAG
    AAAGAAATGA TNGTTTTGAA AGCGATATAA CATTAGNGGT ATAAAAACAA
    ATTCTAATTT TTTATTTTAT CTTCTNGACA ACATTTAAGN GTAAAACTCT
    TAACATTATT TGAACATTTA AAATAGTNGA TTCTCATACC TCTTCCCTTA
    ATCGAGCATT TTCGAGACGG AGTTGGNGTT CGTCGAATGA CATTTCTCCG
    ATAGCTGTNG GACCACCACA ATTAGGACAC NAAGCATTTG CAAGAGCCTC
    TCGATATCTT AGGTNGNCGT TTCGAAGCT
  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1515468 [Map]; Strand: c
      • AT1G05230.3 - [+] show detail - homeodomain GLABROUS 2
        Distance: 0; Region: intron4 (CDS)
      • AT1G05230.1 - [+] show detail - homeodomain GLABROUS 2
        Distance: 0; Region: intron4 (CDS)
      • AT1G05230.2 - [+] show detail - homeodomain GLABROUS 2
        Distance: 0; Region: intron5 (CDS)
      • AT1G05230.4 - [+] show detail - homeodomain GLABROUS 2
        Distance: 0; Region: intron6 (CDS)
    Flanking Genome Sequence: 11-5051-1 - 5-prime edge
    ATAATAACAA CATTACTCAA CGTTTCTTCT TGTGACCAAA CTTTGAAAAC 
    CACAAGGATC AATAATCTTT CTTATTTGTC TGTTTTAGAT CGACCGTATA
    TCCGCAATCG CAGCTAAATA CGTAGGCAAG CCAGTCTCAA ACTATCCACT
    TATGTCTCCT CCTCCTCTTC CTCCACGTCC ACTAGAACTC GCCATGGGAA
    ATATTGGAGG AGAAGCT

AT1G05230.1

Model type
Protein coding
Short Description
homeodomain GLABROUS 2
Curator Summary
Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes. The mutations do not affect trichome growth or branch number.
Computational Description
homeodomain GLABROUS 2 (HDG2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, trichome morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1); Has 8730 Blast hits to 8651 proteins in 460 species: Archae - 0; Bacteria - 0; Metazoa - 6110; Fungi - 222; Plants - 2153; Viruses - 0; Other Eukaryotes - 245 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05230.2

Model type
Protein coding
Short Description
homeodomain GLABROUS 2
Curator Summary
Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes. The mutations do not affect trichome growth or branch number.
Computational Description
homeodomain GLABROUS 2 (HDG2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, trichome morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1); Has 8732 Blast hits to 8653 proteins in 460 species: Archae - 0; Bacteria - 0; Metazoa - 6111; Fungi - 223; Plants - 2153; Viruses - 0; Other Eukaryotes - 245 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05230.3

Model type
Protein coding
Short Description
homeodomain GLABROUS 2
Curator Summary
Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes. The mutations do not affect trichome growth or branch number.
Computational Description
homeodomain GLABROUS 2 (HDG2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, trichome morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05230.4

Model type
Protein coding
Short Description
homeodomain GLABROUS 2
Curator Summary
Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes. The mutations do not affect trichome growth or branch number.
Computational Description
homeodomain GLABROUS 2 (HDG2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, trichome morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1).
Link
InterPro Scan - TAIR