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11-5229-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12607306 [Map]; Strand: w
      • AT4G24330.1 - [+] show detail - Protein of unknown function (DUF1682)
        Distance: -978; Region: promoter
      • AT4G24340.1 - [+] show detail - Phosphorylase superfamily protein
        Distance: -141; Region: promoter
    Flanking Genome Sequence: 11-5229-1 - 5-prime edge 
    AAGGCATTAA GCTATTAAGA ATTACCANCC CGGGCNGCAN GGACNCAGAN 
    CTGANANAAT AAAATACGTT ATCATCTTTG ATCACGAATA AAAAATATTA 
    ATGAAACGAG AATCATGTGT AAAGAAGAAA GTTCATACTA GTTTCGGCTC 
    ATGTGAGCCT TGTAGAGGTT TGACTTGGAT GCTATATATA TGTAGACATG 
    AGCTAGGCAT TTATCTCAAA CCAACCAACC AATATATCAG ATGGCTTCCA 
    TGGATCACAA TCATTTTCTT TTTCCTCTCC TCTTCATCAT CATCATCTCT 
    TCCTTGCACG TTTTGCGTGC TTCGACCACA CCTTCACACT CACACAAACT 
    AAAATCCGCC ACTACCATTA GAAAAATCAA CCGTAGAGGA CCTTACATTG 
    GCCTTGTGAC GGTCTTTGAG ACCGAAGAAG ATGCTTTTCT CGGCAGTGTT 
    GATTTCAGAC TCGATCCTAC GCATCCTTTC CTCGATCTCT CTGGTATCTA 
    CACTGATCCC TAAAATTACC ACTTGAATTG GTTTCTATTA AGTTTTTCTA 
    CCTTGAGAGA GTCTCTAGAC TCTTGTTCCT TTGAGATGAA AATGTAGTAG 
    TTTCTGATTT TAATGAGTAA TGAATGCNGG AAGACGTTTT CNNNTAGGGA 
    AGATTCATGG AAAGAAGGTN GNGTTGTCAN ATGTGGGATA NGAATGGNGA 
    NTAANTNNAC CCCCAAANAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12607191 [Map]; Strand: w
      • AT4G24330.1 - [+] show detail - Protein of unknown function (DUF1682)
        Distance: -863; Region: promoter
      • AT4G24340.1 - [+] show detail - Phosphorylase superfamily protein
        Distance: -256; Region: promoter
    Flanking Genome Sequence: 11-5229-1 - 3-prime edge 
    AATGCCTTAA GACCATCGTG TTTTAATGCT TCTACATATA TTAACATGTC 
    CTCCTTATTA ATCAGTCACT CAAAATGATT AATTAGAAGG GATGTTTTGC 
    TTTAATTGAT ACATCCTAAT AAACTCAGTA AACCTTAGGG TATGATTTTA 
    TTGATAGAAA GAAGATATTA ATTTGGCTAT TAAATTAACT TTAAACATCT 
    ATATATACAT TTTTGCAGCC ATTTTGTGAA ATAAATTCTG TAGTTGAGAC 
    TTATTTACAA TGGTTGCCAC TGGATTTTAA TATTTGTTTT TGATAATTAG 
    AAAAAAAATC TTCGAATTAA ATATTTGACA TTTAACAATT TTCCTAAAAT 
    CTCTCTACAT TAACTACACG ATTGGTTACT AAAATAAAAC TTTCAAAATA 
    TTTAATATCA TTTAATTACT ACAAAATTAT CATTATTGAT ATTGTTTTTC 
    TGCATGACTA TTACAATTCA ATTATAATCA TCAAACCGCA GAGATATTTG 
    ATAGCATTTA ATTACTAGAT AATTTTAAAA ATAAATGATT CATAAACATA 
    TGATAAATAA GATCAACATT AATAAAATAA ATGAGTTTTT TTACGGGACG 
    GGTTGGCGGG ACGGGTTTGG CAGGACGTTA CTTAATAACA ATTCTAAACT 
    ATAAAATAAA AATATTTTAT AGATAGCTAC ATAAATAGTT ACAAATTGCA 
    AACTTTTATA TATATTAAT

AT4G24330.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1682)
Computational Description
Protein of unknown function (DUF1682); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1682 (InterPro:IPR012879); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1682) (TAIR:AT5G49945.1); Has 377 Blast hits to 366 proteins in 149 species: Archae - 0; Bacteria - 16; Metazoa - 149; Fungi - 92; Plants - 46; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G24340.1

Model type
Protein coding
Short Description
Phosphorylase superfamily protein
Computational Description
Phosphorylase superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: nucleoside metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Nucleoside phosphorylase (InterPro:IPR000845), Nucleoside phosphorylase, family 1 (InterPro:IPR018017); BEST Arabidopsis thaliana protein match is: Phosphorylase superfamily protein (TAIR:AT4G24350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR