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11-5365-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3105474 [Map]; Strand: w
      • AT1G09580.1 - [+] show detail - emp24/gp25L/p24 family/GOLD family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 11-5365-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATATTC ATTATGGTGC AGGTGACATC CCCATATGGC 
    AACAATCTGC ACAATATGGA AAACGTAACG CATGGCCAAT TTGCATTTAC 
    AACCCAAGAA TCAGGGAACT ACTTGGCGTG CTTTTTGGGC AGATGAAAAG 
    AGTCACNGGA AACAAAAATG TTAGCATCAA CATTGACTGG AGAACTGGAA 
    TCGCTGCTAA GGATTGGGCC TCTATTGCTA AGAAAGAGAA GATCGAGGTT 
    AGCTTTCAAG AGATTTTACA GTTCAGAGAG TGGTATTGCT TATAATTTTG 
    CTTCAAAATA TTTCTAAAAT TTGTTACTCT ATGACAATTG CTTAAGGGTG 
    TGGAGCTGGA GATCAGGAAA CTCGAAGGCG CAGTCGAAGC CATCCATGAA 
    AATATACTCT ACCTAAGAAA CAGGTAAAGT CATCTTCAGC TGCATGAACT 
    GCTCTTGCCT TCTTTGCTGA CTCTCATTAT CAAAATGGTA ATTGCAGAGA 
    AGCAGACATG AGGACAATGA GTGAGAAAAC GAACTCGCGG GTGGCTTGGT 
    ACAGTATAAT GTCACTAGGT GTTTGCATTG CTGTCTCTGG TTTCCANGTA 
    CTCTACTTGA AGCAGTACTT TGAGAAGAAG AAGCTACCAN CCCGGGCCGN 
    NNACCACNCG GNCCCNNNAG GNNNNNNNNN T

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3105426 [Map]; Strand: w
      • AT1G09580.1 - [+] show detail - emp24/gp25L/p24 family/GOLD family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 11-5365-1 - 3-prime edge 
    AATAATGATT CTCAAAACTC AGAGCCAAGA ATAAAAAGGA ACAGAGGTTA 
    CCATTCAGAA ACATTGTATT CCTTTTTTCA AGTCGACTTC AAAGACTGCT 
    CTCAATCCAA AGGACACTAT CTTAAACAAT CCATCAAACT ATCTGGAACT 
    AGCACATAGC AATGATTACT AAATACCAAA TGATACTTGC TCAATAAAAG 
    AAACTCCCTT GTTCGTAATA ATTATCATTG TTCCCAAACA TACACATCAA 
    AAACACAGAC TTCATTAAAA GACCACATAA AGTTTCAATT TTTCTTATCT 
    CAATCTCACA GCTAATTACT GATATTACGG CAAAAAAAAA GGGTNTTCAC 
    AGGGATTAAG CTNTACACAA GCATCTGANC ATTTATACAA ATCCGAAAAT 
    CATCATAACA AACAATCAAA GAAAGACATG CATGATCATA ATTTTCCAAA 
    TAAGGAAACT TGGATCGANA ATTAATACAT GCCTTTCTAA TTCCTAAACG 
    TGACTCATGA ATCAGTTGAA ATTATGGATC GAGTAACACA AAATGCAGAT 
    TCAAATCACT GAACAAGCAA NATGATAGGA ACAGAAAATC GAANACNCTT 
    ACCTTGACGG ATATAGTGGG CATGACGCTC GNNGATCCTC GGAGATGATG 
    AGGTAATCAG CCCAAAACGA CGACNTTGCT CTGGATTTCT TCAAATACAC 
    ACTTTGGTC

AT1G09580.1

Model type
Protein coding
Short Description
emp24/gp25L/p24 family/GOLD family protein
Computational Description
emp24/gp25L/p24 family/GOLD family protein; FUNCTIONS IN: protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: endomembrane system, integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family/GOLD family protein (TAIR:AT1G57620.1); Has 1762 Blast hits to 1760 proteins in 238 species: Archae - 0; Bacteria - 0; Metazoa - 806; Fungi - 509; Plants - 239; Viruses - 0; Other Eukaryotes - 208 (source: NCBI BLink).
Link
InterPro Scan - TAIR