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11-5434-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1458013 [Map]; Strand: c
      • AT1G05070.1 - [+] show detail - Protein of unknown function (DUF1068)
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 11-5434-1 - 5-prime edge 
    GGGATAAACA TCTACTTGAA TGATGTTTCA TTCGTTTAGG TGTTCTCCAT 
    CTTAAAAAGA TTATCTCAGT TATTTGTCCA CAGTGTTGAT GCTCCTATTG 
    TTTGAGTTAC ATTAATGGTT CAAGTTATGA TTTGTTAACT TCTCGGATTG 
    TGGAAGTTGA AGTTTACTGG CGACTGTTCT GATAATAGCC AATCAACAAA 
    CAATGCAGTT TGTTTGGATT GTATGCATTG TGATTGCTTT TAGACCGATT 
    TGATTGATAG AATTTGTTTA GTGAACCCCA AGAAGACTGT AGTATGAACT 
    CAACATCATT ATTTGTAATG CTTGTTGTAA CAGATTTCTT AAGTTACTAT 
    ATGTTTCTCG CTAAGCTGAA TTTATATTCT TCTTCAGATG TTACCAATTC 
    CAAAAGATTG ATCCTTTTTT ACTTGTTTCC TTTCTTCTTG CAGAGCTCAG 
    TAATGCTTCT TTTGCTGGTG AGTTAATTGT GAATGGTATT TCGTTAACTG 
    TATCAGTTTA AAAGTCTTTT AGCAATCGAG TCTTTGTACT AAACTTCTCT 
    AGTTTTGAAT GTGTANATTG TGCAAAGCAC GATCCAGAGG TGAACGAAGA 
    CACTGANAAG AACTNTGCTG AACTTCTTAC CGAGGAACTG AAGCTGCGTG 
    AAGCANAATC TTTAAAGAAC CNCAACCGAG CANACATGGG GCTNTTGGAG 
    GCCAAAAAGG TACCTTNTTN NTTCCAAAAG GAAGCAAAAA ANGTCAACTC 
    GGGTATGGAA ACNTGCCAAN AAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1458120 [Map]; Strand: c
      • AT1G05070.1 - [+] show detail - Protein of unknown function (DUF1068)
        Distance: 0; Region: intron1 (CDS)
      • AT1G05080.1 - [+] show detail - F-box/RNI-like/FBD-like domains-containing protein
        Distance: -971; Region: promoter
    Flanking Genome Sequence: 11-5434-1 - 3-prime edge 
    CAGTAGATCT ACACTTACTT ACTACACTAA TCATTCTCAG ACTCAAACTC 
    AAGCACGAAT CAAGCTCAAA GCT

AT1G05070.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1068)
Computational Description
Protein of unknown function (DUF1068); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1068 (InterPro:IPR010471); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1068) (TAIR:AT2G32580.1); Has 119 Blast hits to 119 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 116; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05080.1

Model type
Protein coding
Short Description
F-box/RNI-like/FBD-like domains-containing protein
Computational Description
F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: Protein with RNI-like/FBD-like domains (TAIR:AT5G44850.1); Has 1798 Blast hits to 1750 proteins in 26 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1794; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR