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11-5475-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1012018 [Map]; Strand: w
      • AT1G03940.1 - [+] show detail - HXXXD-type acyl-transferase family protein
        Distance: -962; Region: promoter
      • AT1G03950.1 - [+] show detail - vacuolar protein sorting-associated protein 2.3
        Distance: 0; Region: intron6 (CDS)
    Flanking Genome Sequence: 11-5475-1 - 5-prime edge 
    TGTCCATTTG TGCAGACTGC TTTTGAAATT CTCTCATAAC CTTAGCCTGT 
    TTTGCTGGAT C

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1011902 [Map]; Strand: w
      • AT1G03940.1 - [+] show detail - HXXXD-type acyl-transferase family protein
        Distance: -846; Region: promoter
      • AT1G03950.1 - [+] show detail - vacuolar protein sorting-associated protein 2.3
        Distance: 0; Region: intron7 (CDS)
    Flanking Genome Sequence: 11-5475-1 - 3-prime edge 
    AATGGACATG ACTGTAAGTT CTTTCAAATC CATCGTTTCT TTAAATCCAT 
    GAACACTCAA ATAGTCATTA ATCTGACTAA TGCATGTGGT ATCCAGACTG 
    AGATGATGTC AGATTCCATA GATGATGCTT TAGACAATGA CGAAGCTGAA 
    GACGAAACAG AGGATTTGAC AAACCAGGTA CATTTCCGGG CTCTATCCAT 
    CAATTCAATT TCTAAAAATA GACTGTTTCA AAGGGTGAAC AAATGCTTTT 
    TGTTTTACTG ATTAGGTTCT TGATGAAATC GGCATTGATA TCGCCTCGCA 
    GGTTTGTTTT TAACCATCGA TTCTTGTCAT TGTTTCCGTA TAATCACGTT 
    TTCTCCGTGA TCCATATTCG CTTGTCTCTG TATTTATCCA TGTGCAGTTA 
    TCATCTGCTC CAAAAGGTAA AATTGGTGGG AAGAAAGCAG AGGATGTTGG 
    CAGGTATTGT ATCCACTAAA CACATCTAGA ACATATCTGT ATCGAAATCA 
    AACCTCGATG TTTTTGTGCA GTTCTGGAAT CGATGAACTG GAGAAGCGGT 
    TGGCGGCGCT TANATAGAAA GAACAAGTAC CATGAGATTG AAGATGTTTC 
    AGACAAAAAA TATTATACAT TCAATGTGTC TTCTACAGTT TGCTTTCTGG 
    GAAGATTTGT GGATNTATAT ATAATAAACA ATATTTAATG GGCCTAATAA 
    ACTACCAAAG C

AT1G03940.1

Model type
Protein coding
Short Description
HXXXD-type acyl-transferase family protein
Computational Description
HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT1G03495.1); Has 1873 Blast hits to 1858 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 18; Plants - 1853; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G03950.1

Model type
Protein coding
Short Description
vacuolar protein sorting-associated protein 2.3
Computational Description
vacuolar protein sorting-associated protein 2.3 (VPS2.3); CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT5G44560.1); Has 1693 Blast hits to 1691 proteins in 237 species: Archae - 2; Bacteria - 12; Metazoa - 754; Fungi - 334; Plants - 366; Viruses - 0; Other Eukaryotes - 225 (source: NCBI BLink).
Link
InterPro Scan - TAIR