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11-5503-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19394366 [Map]; Strand: c
      • AT2G47240.1 - [+] show detail - AMP-dependent synthetase and ligase family protein
        Distance: 0; Region: exon4 (CDS)
      • AT2G47240.2 - [+] show detail - AMP-dependent synthetase and ligase family protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 11-5503-1 - 5-prime edge
    GGGNAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATTAGG GGGCTCGTAG TGCAGAGCCA ATCTGCAAAA
    CTTCTTCGTA TACTTCCTTG TACGTTTTCC ACATATATGG TCCAACCTAA
    ACCGATCCGT ACAAATATAC GTATTAACCC ATAAATATTT TCTCTTCTTT
    TTGTTAAGTA ACAATAAGAA AAATTCAAGA AACTCACCTT CTCATCAACA
    ATTCGACGCC ATCCAAGCAT ATTATTGTCA GGGAATTTCT CCACTGATTT
    ACTAAAAATA AAACCCCAAA AGAGAGTTTA TTAATTGCAA TAATTATACA
    CAAAAGGTGA TATATGTCTA ACTATAATTT GTTTTTTTTC TTTTTATATA
    TTCAACATCT AACAAGAAAA CTATTTATAA ATATATTTAG AGTCTTAGAG
    ATATACCTGA AAATGTCCCA AGCAGTGGTG ATCTCANAAT CAATCGGAGG
    AAAACCTTTT TCCGACAGAA NATTCCGGTA CACCGGACCT ACCGACGGCT
    TTCCGTCTAT TCCTTTAACT CCCTCTTCTA CCTTAGCCGC AAAAGACTTC
    ATTCTCTATT TCTCTCTCTT GTTTTTTTCT TCCCTGAAGA GAAATTTAAA
    ATGAATCCAA CCGACGGAGT TAAATAATAA AATTTAACAC TGCCGAATAG
    AGAGATTAAT GGTACAAATT TTCAAGCAAA ATGTGAAATN GATAAGAGAA
    ATNTAAAATG AGGGAATTTA TCA

AT2G47240.1

Model type
Protein coding
Short Description
AMP-dependent synthetase and ligase family protein
Curator Summary
Encodes an acyl-CoA synthetase that acts on long-chain and very-long-chain fatty acids, involved in cuticular wax and cutin biosynthesis
Computational Description
LONG-CHAIN ACYL-COA SYNTHASE 1 (LACS1); FUNCTIONS IN: long-chain fatty acid-CoA ligase activity, very long-chain fatty acid-CoA ligase activity; INVOLVED IN: fatty acid biosynthetic process, cutin biosynthetic process, wax biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT4G23850.1); Has 55133 Blast hits to 51773 proteins in 3295 species: Archae - 1024; Bacteria - 35525; Metazoa - 2495; Fungi - 1959; Plants - 1853; Viruses - 1; Other Eukaryotes - 12276 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47240.2

Model type
Protein coding
Short Description
AMP-dependent synthetase and ligase family protein
Curator Summary
Encodes an acyl-CoA synthetase that acts on long-chain and very-long-chain fatty acids, involved in cuticular wax and cutin biosynthesis
Computational Description
LONG-CHAIN ACYL-COA SYNTHASE 1 (LACS1); FUNCTIONS IN: long-chain fatty acid-CoA ligase activity, very long-chain fatty acid-CoA ligase activity; INVOLVED IN: fatty acid biosynthetic process, cutin biosynthetic process, wax biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT4G23850.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR